View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0726_low_3 (Length: 457)
Name: NF0726_low_3
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0726_low_3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 38 - 457
Target Start/End: Complemental strand, 40523234 - 40522816
Alignment:
| Q |
38 |
ttgggatttgggtataaaatctaggaggccaaaagaatattccttccatgattcacacccttcttcttctggtcaagaagtgattcacatcatgtttaag |
137 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
40523234 |
ttgggatttgggtacaaaatctaggaggccaaaagaatatttcttccatgattcacacccttcttcttttggtcaagaagtgattcacgccatgtttaag |
40523135 |
T |
|
| Q |
138 |
catcttaggtgagatgcatggaacatcattttgtcatgttaagccttgaaattattgtcaagcggtgcaaccttttctatatttagatggcatgatcatt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40523134 |
catcttaggtgagatgcatggaacatcattttgttgtgttaagccttgaaattattgtcaagcggtgcaaccttttc--tatttagatggcatgatcatt |
40523037 |
T |
|
| Q |
238 |
gatcagaaatacaattcaatttgaatccaacctatttaaacatagaacacaaaattagcttgaatatacacttgaggttaaataaaatgaaatatggatt |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40523036 |
gatcagaaatacaattcaatttgaatccaacctatttaaacatagaacacaaaattagcttgaatatacacttgaggttaaataaaatgaaatatggatt |
40522937 |
T |
|
| Q |
338 |
tagcatacactagctgttg-ctccaaaagcatcagacatacataatgcattcacaccaagttgacattttattccttctgtctatatttgcccccacaaa |
436 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40522936 |
tagcatacactagctgttgcctccaaaagcaacagacatacataatgcattcacaccaagttgacattttattgcttctgtctatatttgcccccacaaa |
40522837 |
T |
|
| Q |
437 |
gttataatcaattcactctca |
457 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
40522836 |
gttataatcaattcactctca |
40522816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3047 times since January 2019
Visitors: 4805