View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0726_low_5 (Length: 445)
Name: NF0726_low_5
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0726_low_5 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 94 - 445
Target Start/End: Original strand, 12174625 - 12174979
Alignment:
| Q |
94 |
caatagacaccaaagtttgtgtagaatggtaatggaaccagtctccacttttaaaatttccagctggtaacatgtaggaaatcttaccttttattaaagt |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12174625 |
caatagacaccaaagtttgtgtagaatggtaatggaaccagtctccatttttaaaatttccagctggtaacatgtagcaaatcttaccttttattaaagt |
12174724 |
T |
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| Q |
194 |
gtcccaattataa---tcattgtaatcatcatcatcattattatctgaagctgcttcttccttgttttctaatacatcagctgggagtagtggttttgtt |
290 |
Q |
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||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12174725 |
gtcccaattataagagtaattgtaaccatcatcatcattattatctgaagctgcttcttccttgttttctaatacatctgctgggagtagtggttttgtt |
12174824 |
T |
|
| Q |
291 |
ccgagttcaaatcttacaatggcatcattcaaaatggaaacaaatgaatgttgattcaattttatgcagttaaggaggagaaaagtacgcgtattttggt |
390 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12174825 |
ccgagttcaattcttacaatggcatcattcaaaatggaaacaaatgaatgttgattcaattttatgcagttagggaggagaaaagtacgcgtattttggt |
12174924 |
T |
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| Q |
391 |
gtattttggtttgttcatttgttgaattcaacacattctgaagagatacacagtt |
445 |
Q |
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| T |
12174925 |
gtattttggtttgttcatttgttcaattcaacacattctgaagagattcacagtt |
12174979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 94 - 445
Target Start/End: Original strand, 12419053 - 12419407
Alignment:
| Q |
94 |
caatagacaccaaagtttgtgtagaatggtaatggaaccagtctccacttttaaaatttccagctggtaacatgtaggaaatcttaccttttattaaagt |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12419053 |
caatagacaccaaagtttgtgtagaatggtaatggaaccagtctccatttttaaaatttccagctggtaacatgtagcaaatcttaccttttattaaagt |
12419152 |
T |
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| Q |
194 |
gtcccaattataa---tcattgtaatcatcatcatcattattatctgaagctgcttcttccttgttttctaatacatcagctgggagtagtggttttgtt |
290 |
Q |
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||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12419153 |
gtcccaattataagagtaattgtaaccatcatcatcattattatctgaagctgcttcttccttgttttctaatacatctgctgggagtagtggttttgtt |
12419252 |
T |
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| Q |
291 |
ccgagttcaaatcttacaatggcatcattcaaaatggaaacaaatgaatgttgattcaattttatgcagttaaggaggagaaaagtacgcgtattttggt |
390 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12419253 |
ccgagttcaattcttacaatggcatcattcaaaatggaaacaaatgaatgttgattcaattttatgcagttagggaggagaaaagtacgcgtattttggt |
12419352 |
T |
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| Q |
391 |
gtattttggtttgttcatttgttgaattcaacacattctgaagagatacacagtt |
445 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
12419353 |
gtattttggtttgttcatttgttcaattcaacacattctgaagagattcacagtt |
12419407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 94 - 437
Target Start/End: Original strand, 12186131 - 12186489
Alignment:
| Q |
94 |
caatagacaccaaagtttgtgtagaatggtaatggaaccagtctccacttttaaaatttccagctggtaacatgtaggaaatcttaccttttattaaagt |
193 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12186131 |
caatagacaccaaagtttgtgtagaatggtaatggaaccagtctccatttttaaaatttccagctggtaacatgtagcaaatcttaccttttattaaagt |
12186230 |
T |
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| Q |
194 |
gtcccaattataa---------------tcattgtaatcatcatcatcattattatctgaagctgcttcttccttgttttctaatacatcagctgggagt |
278 |
Q |
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||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
12186231 |
gtcccaaatataagagtcatcatgtaaatcattgtaaccatcatcatcattattatctgaagctgcttcttccttgttttctaatacatctgctggtagt |
12186330 |
T |
|
| Q |
279 |
agtggttttgttccgagttcaaatcttacaatggcatcattcaaaatggaaacaaatgaatgttgattcaattttatgcagttaaggaggagaaaagtac |
378 |
Q |
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|||||||||| ||| ||||||| ||| |||||||||| |||||||||||||||||||||||| | | ||||| |||||||||| |||||||||||||| |
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| T |
12186331 |
agtggttttgctccaagttcaatccttgcaatggcatctttcaaaatggaaacaaatgaatgtcggtccaattctatgcagttagggaggagaaaagtag |
12186430 |
T |
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| Q |
379 |
gcgtattttggtgtattttggtttgttcatttgttgaattcaacacattctgaagagat |
437 |
Q |
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| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
12186431 |
acttattttggtgttttttggtttgttgatttgttgaattcaacacattatgaagagat |
12186489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 94 - 437
Target Start/End: Original strand, 12430559 - 12430917
Alignment:
| Q |
94 |
caatagacaccaaagtttgtgtagaatggtaatggaaccagtctccacttttaaaatttccagctggtaacatgtaggaaatcttaccttttattaaagt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12430559 |
caatagacaccaaagtttgtgtagaatggtaatggaaccagtctccatttttaaaatttccagctggtaacatgtagcaaatcttaccttttattaaagt |
12430658 |
T |
|
| Q |
194 |
gtcccaattataa---------------tcattgtaatcatcatcatcattattatctgaagctgcttcttccttgttttctaatacatcagctgggagt |
278 |
Q |
| |
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||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
12430659 |
gtcccaaatataagagtcatcatgtaaatcattgtaaccatcatcatcattattatctgaagctgcttcttccttgttttctaatacatctgctggtagt |
12430758 |
T |
|
| Q |
279 |
agtggttttgttccgagttcaaatcttacaatggcatcattcaaaatggaaacaaatgaatgttgattcaattttatgcagttaaggaggagaaaagtac |
378 |
Q |
| |
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|||||||||| ||| ||||||| ||| |||||||||| |||||||||||||||||||||||| | | ||||| |||||||||| |||||||||||||| |
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| T |
12430759 |
agtggttttgctccaagttcaatccttgcaatggcatctttcaaaatggaaacaaatgaatgtcggtccaattctatgcagttagggaggagaaaagtag |
12430858 |
T |
|
| Q |
379 |
gcgtattttggtgtattttggtttgttcatttgttgaattcaacacattctgaagagat |
437 |
Q |
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| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
12430859 |
acttattttggtgttttttggtttgttgatttgttgaattcaacacattatgaagagat |
12430917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 13167535 - 13167495
Alignment:
| Q |
334 |
atgaatgttgattcaattttatgcagttaaggaggagaaaa |
374 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||| |||||| |
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| T |
13167535 |
atgaatgtggatccaattttatgcagttaaggagcagaaaa |
13167495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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