View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0726_low_7 (Length: 432)
Name: NF0726_low_7
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0726_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 2094829 - 2094419
Alignment:
| Q |
17 |
caaatatctccccaagtaaccccatatttgtcttgaaggactctcacccataacccactattgatctattttcatcctccacaaccatatttgcttagta |
116 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2094829 |
caaatatctccc-aagtatccccatatttgtcttgaaggactctcacccataacccactattgatctattttcatcctccacaaccatatttgcatagta |
2094731 |
T |
|
| Q |
117 |
aagcaaaattaaaagctttgatgttcctaatgtctaaccctccatccttcctccttctacaaattttatcgcattttacctaatgaattttccctgtctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2094730 |
aagcaaaattaaaagctttgatgttcctaatgtctaaccctccatccttcctccttctacaaattttatcgcattttacctaatgaattttccctgtctc |
2094631 |
T |
|
| Q |
217 |
ttcactcgcatctactttttattttatcttnnnnnnnnngacattcaatatctgaaatgatactcgacgacactttgaaaaataacag--aaaacacgtg |
314 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
2094630 |
tccactcgcatctactttttattttatctt-caaaaaaagacattcaatatctgaaatgatactcgacgacactttgaaaaataacagaaaaaacacatg |
2094532 |
T |
|
| Q |
315 |
aagatttgacaaaacaaatttgattaggaatgatatgatcacctatttaacaagttcttaactttttcactctcatatataacgtacaattttttgaatt |
414 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2094531 |
aagattttacaaaacaaatttgattaggaatgatatgatcacctatttaacaagttcttaactttttcactctc----ataacgtacaattttttgaatt |
2094436 |
T |
|
| Q |
415 |
ctgctcattacccaaat |
431 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2094435 |
ctgctcattacccaaat |
2094419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3539 times since January 2019
Visitors: 4814