View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_high_17 (Length: 306)
Name: NF0727_high_17
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 19857633 - 19857848
Alignment:
| Q |
12 |
ataagaaaggttaggttgcggatgaaatgtgaaagacgaagaatgttggcggggttagttactagttatatagaaaggcggtgtgagttgtgtggttaag |
111 |
Q |
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| T |
19857633 |
ataagaaaggttaggttgcggatgaaatgtgaaagacgaagagtgttggcggggttagttactggttatatagaaaggcggtgtgagttgtgtggttaag |
19857732 |
T |
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| Q |
112 |
tttttgttaaccatggttaaaggaatatactcactccatcagaaaataaaggaggaaaactttatgagtaattataaagttaatggaaatgtgacagaca |
211 |
Q |
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| T |
19857733 |
tttttgttaaccatggttaaaggaatatactcactccatcagaaaataaaggaggaaaactttacgagtaattataaagttaatggaaatgtgacagaga |
19857832 |
T |
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| Q |
212 |
gtgttttattactatg |
227 |
Q |
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| T |
19857833 |
ggcttttattactatg |
19857848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 19857886 - 19857954
Alignment:
| Q |
230 |
agctcgagggtcgaacaatatcagtttcggtttttgaaaatagagtttggagtaactgaggtctgtgct |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19857886 |
agctcgagggtcgaacaatatcagtttcggtttttgaaaatagagtttggagtaactgaggtctgtgct |
19857954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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