View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_high_21 (Length: 253)
Name: NF0727_high_21
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_high_21 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 33250495 - 33250711
Alignment:
| Q |
1 |
actatgcttcacttcttgcgtgattgtgcttttgtgaattgcttttggagatcaatttgattctcgagtaacttg-ttttccagaccgataatttgtatg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
33250495 |
actatgcttcacttcttgcgtgattgtgcttttgtgaattgctcttggagatcaatttgattctcgagtaactcgtttttccagaccgataatttgtatg |
33250594 |
T |
|
| Q |
100 |
agtggttgcggactggtgttaaaggttcaa------ctatttatatgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatgga |
193 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33250595 |
agttgttgcggactggtgttaaaggttcaattatttatatttatatgttcctggaagctatttggtggctttggtgcgcaaggaataagttatgtatgga |
33250694 |
T |
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| Q |
194 |
gaatgaattggtttcac |
210 |
Q |
| |
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||||||||||||||||| |
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| T |
33250695 |
gaatgaattggtttcac |
33250711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 33242575 - 33242791
Alignment:
| Q |
1 |
actatgcttcacttcttgcgtgattgtgcttttgtgaattgcttttggagatcaatttgattctcgagtaacttg-ttttccagaccgataatttgtatg |
99 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
33242575 |
actatgcttcacttcttgtgtgattgtgcttttgtgaattgcttttggagatcaatttgattctcgagtaactcgtttttccagaccgataatttgtatg |
33242674 |
T |
|
| Q |
100 |
agtggttgcggactggtgttaaaggttcaac------tatttatatgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatgga |
193 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| |
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| T |
33242675 |
agtggttgcggactggtgtcaaaggttcaactatttatatttatatgctcctggaagctatttggtgactttggtgtgcaaggaataatttatgtatgga |
33242774 |
T |
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| Q |
194 |
gaatgaattggtttcac |
210 |
Q |
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||||||||||||||||| |
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| T |
33242775 |
gaatgaattggtttcac |
33242791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 44985591 - 44985802
Alignment:
| Q |
1 |
actatgcttcacttcttgcgtgattgtgcttttgtgaattgcttttggagatcaatttgattctcgagtaacttgtttt-ccagaccgataatttgtatg |
99 |
Q |
| |
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|||| |||||||| |||| |||||| ||||| ||||||| |||||| ||||||||| |||||||| |||||| |||| ||||||||||||||||| | |
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| T |
44985591 |
actacgcttcactgcttgtgtgattatgcttctgtgaatcacttttgcagatcaattggattctcgggtaactcatttttccagaccgataatttgtgtt |
44985690 |
T |
|
| Q |
100 |
agtggttgcggact-ggtgttaaaggttcaactatttatatgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatggagaatg |
198 |
Q |
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|||||||||||||| || |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
44985691 |
agtggttgcggactcggggttaaaggttcaactatttatatgctcctggtagctgtttggtggctttggtgcgcaaagaataagttgtgtatggagaatg |
44985790 |
T |
|
| Q |
199 |
aattggtttcac |
210 |
Q |
| |
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| |||||||||| |
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| T |
44985791 |
agttggtttcac |
44985802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 25867212 - 25867078
Alignment:
| Q |
5 |
tgcttcacttcttgcgtgattgtgcttttgtgaattgcttttggagatcaatttgattctcgagtaac-ttgttttccagaccgataatttgtatgagtg |
103 |
Q |
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||||||| | ||| ||| ||||||||||||||||| | ||||||||||||||| |||||||| |||| || ||||||| ||| ||||||||||||| || |
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| T |
25867212 |
tgcttcattgcttacgttattgtgcttttgtgaatcgtttttggagatcaattagattctcggataacttttttttccaaaccaataatttgtatgaatg |
25867113 |
T |
|
| Q |
104 |
gttgcggactggtgttaaaggttcaactatttata |
138 |
Q |
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|||| ||||||||| |||| |||| ||||||||| |
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| T |
25867112 |
gttgtggactggtgctaaatcttcatctatttata |
25867078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 40727 - 40632
Alignment:
| Q |
115 |
gtgttaaaggttcaactatttatatgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatggagaatgaattggtttcac |
210 |
Q |
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|||| ||||||||| |||||||||||||||| | ||| |||||||||||||| |||| || |||||| | ||| ||||||||||||||||||||| |
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| T |
40727 |
gtgtgaaaggttcatctatttatatgttccttgcggctgtttggtggctttggcgcgctagaaataagctgtgtgtggagaatgaattggtttcac |
40632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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