View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_high_22 (Length: 233)
Name: NF0727_high_22
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_high_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 44406199 - 44406431
Alignment:
| Q |
1 |
tcatcattatagaatattaacattcacataaagttgaagaaaaagcaccaacctttaacaaaggcatgtgaatgtaaaacaaagtgtcattggggttaag |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44406199 |
tcatcatgatagaatattaacattcacataaagttgaagaaaaagcaccaacctttaacaaaggcatgtgaatgtaaaacaaagtgtcattggggttaag |
44406298 |
T |
|
| Q |
101 |
aagagcagactcaaactcttcagcagaaacttcaagcgagatattcagcaggggcctaaatagctgcaacaacaagaaacaccataaaaattaagctttt |
200 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44406299 |
aagagcagtctcaaactcttcagcagaaaattcaagcgagatattcagcaggggcctaaatagctgcaacaacaagaaacaccataaaaattaagctttt |
44406398 |
T |
|
| Q |
201 |
caaaacaaaagcaaaaagtaacataacccaaat |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44406399 |
caaaacaaaagcaaaaagtaacataacccaaat |
44406431 |
T |
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