View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_high_4 (Length: 549)
Name: NF0727_high_4
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 32 - 531
Target Start/End: Original strand, 23852921 - 23853420
Alignment:
| Q |
32 |
atttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaa |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852921 |
atttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaa |
23853020 |
T |
|
| Q |
132 |
agcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaag |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853021 |
agcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaag |
23853120 |
T |
|
| Q |
232 |
tgaaacaactgaaaaagcaaaactttggtttctatccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacac |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853121 |
tgaaacaactgaaaaagcaaaactttggtttctatccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacac |
23853220 |
T |
|
| Q |
332 |
aaccaacacaacttaaataggcatctcattttattatgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcat |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853221 |
aaccaacacaacttaaataggcatctcattttattatgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcat |
23853320 |
T |
|
| Q |
432 |
atcttgagcacttatttatatttggggacaccttatattcaaacacaattgagtctctatgtaattgaactctagttaattggtatctatgatgatgtcc |
531 |
Q |
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| T |
23853321 |
atcttgagcacttatttatatttggggacaccttatattcaaacacaattgagtctctatgtaattgaactctagttaattggtatctatgttgatgtcc |
23853420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 32 - 352
Target Start/End: Original strand, 23752220 - 23752535
Alignment:
| Q |
32 |
atttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaa |
131 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||| |||||||| |
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| T |
23752220 |
attttaacaacatgacctgtaatgttgctgcaacttatacctttccatttacaacattcatttccttcccaagaggaaagtcttaatgatgtatcattaa |
23752319 |
T |
|
| Q |
132 |
agcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaag |
231 |
Q |
| |
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|||||||||||| ||||||||| |||| |||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||| |||||||| |
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| T |
23752320 |
agcttcctttgagttcaagaagtgcttgcctctcttgttctatgcaaccaaatgatgaatggctactagaacatagtaacatgaaacatgtgctcaaaag |
23752419 |
T |
|
| Q |
232 |
tgaaacaactgaaaaagcaaaactttggtttctatccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacac |
331 |
Q |
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|||||||| ||||||| ||||||||||||||| ||||||| ||||||| || ||||||| |||| |||| ||||||||||||| | ||| | |
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| T |
23752420 |
ggaaacaacaacaaaagcataactttggtttctatgcatatttgagggaagtgaatgaagcaacgctgtaagttgggtgggcacaacg-----gggactc |
23752514 |
T |
|
| Q |
332 |
aaccaacacaacttaaatagg |
352 |
Q |
| |
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||||||||||||||||||||| |
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| T |
23752515 |
aaccaacacaacttaaatagg |
23752535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 32 - 282
Target Start/End: Original strand, 22619613 - 22619863
Alignment:
| Q |
32 |
atttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaa |
131 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||| |||||||| |
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| T |
22619613 |
atttttataacatgacctgtaatgttgctgcaacttatacctttccatttacaacattcatttccttcccaagaggaaagtcttaatgatgtatcattaa |
22619712 |
T |
|
| Q |
132 |
agcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaag |
231 |
Q |
| |
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|||||||||||| | | | |||||||| |||||||||||| | |||||||||||||||||||| || |||||||||||||||||| |||| |||||||| |
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| T |
22619713 |
agcttcctttgagtgctaaaagagcttgcctctcttgttctaagcaaccaaatgatgaatggctactagaacatagtaacatgaaacatgtgctcaaaag |
22619812 |
T |
|
| Q |
232 |
tgaaacaactgaaaaagcaaaactttggtttctatccatatttaagggaag |
282 |
Q |
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|||||||| ||||||| ||||||||||||||| ||||||| ||||||| |
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| T |
22619813 |
ggaaacaacaacaaaagcataactttggtttctatgcatatttgagggaag |
22619863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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