View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0727_high_5 (Length: 544)
Name: NF0727_high_5
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_high_5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 4903663 - 4904132
Alignment:
| Q |
1 |
aggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgag |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4903663 |
aggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtggcaatgttggaatggtgag |
4903762 |
T |
|
| Q |
101 |
tttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttg |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903763 |
tttttgaacaaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttg |
4903862 |
T |
|
| Q |
201 |
tgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaa |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
4903863 |
tgacagatgtggaggagctgttggaatctgttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaa |
4903962 |
T |
|
| Q |
301 |
ttggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggct |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4903963 |
ttggaatctgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggtt |
4904062 |
T |
|
| Q |
401 |
taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttctaagctgcttctttagga |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4904063 |
taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttctaagctgcttctttagga |
4904132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 1557161 - 1557320
Alignment:
| Q |
23 |
aagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgca |
122 |
Q |
| |
|
||||||||||| ||| |||| |||||||||||||| || || |||||||||||||||||||||||||||| ||| | || | ||||||||| | || | |
|
|
| T |
1557161 |
aagcttatggactggctggactttaattttttaatccccccaaatctgtttattatgtgggaatgttggattggagctgttgtcaataaaaagattcgga |
1557260 |
T |
|
| Q |
123 |
ggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgaca |
182 |
Q |
| |
|
||||| || | ||||||||||| | ||||||| ||||||||||| |||||||||| |
|
|
| T |
1557261 |
agggtgtgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatgaca |
1557320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 336
Target Start/End: Original strand, 1557359 - 1557474
Alignment:
| Q |
221 |
ttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtt |
320 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||| ||||||||| |||| | || ||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
1557359 |
ttggaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgtc |
1557458 |
T |
|
| Q |
321 |
tgttgcggtgatgctg |
336 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
1557459 |
tgttgcgttgaggctg |
1557474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 12123902 - 12123866
Alignment:
| Q |
161 |
atttggaaagcgaggaatgacagaattttcaacaatg |
197 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
12123902 |
atttggaaagctaggaatgacagaattttcaataatg |
12123866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 22153894 - 22153441
Alignment:
| Q |
1 |
aggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22153894 |
aggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaatggtgag |
22153795 |
T |
|
| Q |
101 |
tttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttg |
200 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
22153794 |
tttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattg |
22153695 |
T |
|
| Q |
201 |
tgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaa |
300 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22153694 |
tgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaa |
22153595 |
T |
|
| Q |
301 |
ttggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggct |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| || ||||| |||||||||| | |
|
|
| T |
22153594 |
ttggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcggctgtttggtcgccttctggttgttatgcagtcgcgtttctctggtt |
22153495 |
T |
|
| Q |
401 |
-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttct |
453 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
22153494 |
ataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttct |
22153441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 22209809 - 22209356
Alignment:
| Q |
1 |
aggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22209809 |
aggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaatggtgag |
22209710 |
T |
|
| Q |
101 |
tttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttg |
200 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
22209709 |
tttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattg |
22209610 |
T |
|
| Q |
201 |
tgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaa |
300 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22209609 |
tgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaa |
22209510 |
T |
|
| Q |
301 |
ttggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggct |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| || ||||| |||||||||| | |
|
|
| T |
22209509 |
ttggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcggctgtttggtcgccttctggttgttatgcagtcgcgtttctctggtt |
22209410 |
T |
|
| Q |
401 |
-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttct |
453 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
22209409 |
ataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttct |
22209356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 41450779 - 41450828
Alignment:
| Q |
48 |
attttttaattcctcctaatctgtttattatgtgggaatgttggaatggt |
97 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | ||| |||||||||||||| |
|
|
| T |
41450779 |
attttttaattcctccaaatttgtttattctttggcaatgttggaatggt |
41450828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 331
Target Start/End: Original strand, 53562135 - 53562433
Alignment:
| Q |
29 |
atggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtg |
128 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||| || ||||| |||||| ||||||||||||||||||| | |||| ||||| ||| || | |||| |
|
|
| T |
53562135 |
atggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagacccgtaaaggtg |
53562234 |
T |
|
| Q |
129 |
gtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatc |
228 |
Q |
| |
|
|||| | ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||| | || || ||||| ||||| | |
|
|
| T |
53562235 |
ttagaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttg----c |
53562330 |
T |
|
| Q |
229 |
tgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcgg |
328 |
Q |
| |
|
|| ||||| ||||||||||||||| |||||| || || || | |||| |||||| || |||||||| |||||||| ||||| |||||| ||||| |
|
|
| T |
53562331 |
agtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcgg |
53562430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 334
Target Start/End: Complemental strand, 38185584 - 38185265
Alignment:
| Q |
15 |
tctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaa |
114 |
Q |
| |
|
||||| || |||||||||||||| ||||||| |||||| ||||||| || ||||||||||| | |||||||||||||||| | | | ||| |||||||| |
|
|
| T |
38185584 |
tctggcgtgagcttatggagtggctggaattcaattttataattccaccgaatctgtttatcacgtgggaatgttggaattgagcggtttataataaaaa |
38185485 |
T |
|
| Q |
115 |
gctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggag |
214 |
Q |
| |
|
| | | | ||| | || | ||||||||||| || |||||||| || |||||||| |||||||| | || ||| || |||| ||| ||| ||| |
|
|
| T |
38185484 |
gatttgtaagggagtgaggcttatttggcatgccgccatttggagcatatggaaagctaggaatgatataacttttaataatgcagtgttggattgtgag |
38185385 |
T |
|
| Q |
215 |
gagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaagg |
314 |
Q |
| |
|
| ||| |||||||| ||||||||||| | |||||||||| ||| ||||| | || | || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
38185384 |
gcattgctggaatctattaaggtgttggcctggaggtggtgttttggtagaataaacttgccggcatgtttgttttacgagtggaattggaatccgaagg |
38185285 |
T |
|
| Q |
315 |
attgtttgttgcggtgatgc |
334 |
Q |
| |
|
| || ||||||||||||||| |
|
|
| T |
38185284 |
aatgcttgttgcggtgatgc |
38185265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 34821538 - 34821358
Alignment:
| Q |
17 |
tggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagc |
116 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| || |||| ||||| ||| ||||||| |||||| | ||||||||||||| | || ||||||||| |
|
|
| T |
34821538 |
tggagtaagctcatggagtggttagacattaatattataatccctccgaatttgtttatcatgtggaattgttggaatggtgcggttcacaataaaaaga |
34821439 |
T |
|
| Q |
117 |
tgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatg |
197 |
Q |
| |
|
| || | ||| | || | |||||||| || || |||||||| || ||||||||||||||||| | ||||| ||||||| |
|
|
| T |
34821438 |
ttcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatg |
34821358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 43073787 - 43073753
Alignment:
| Q |
231 |
ttaaggtgttgtcttggaggtggtttttgggtagg |
265 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43073787 |
ttaaggtgttgtcttggaggtggttgttgggtagg |
43073753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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