View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_high_7 (Length: 483)
Name: NF0727_high_7
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 30 - 467
Target Start/End: Complemental strand, 10317772 - 10317335
Alignment:
| Q |
30 |
caactgaatcaggctattggaaagcaactggaaaagataaagagatctacaaagggaaaagtaaccaacttgttggtatgaagaaaactcttgtgttcta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10317772 |
caactgaatcaggctattggaaagcaactggaaaagataaagagatctacaaagggaaaagtaaccaacttgttggtatgaagaaaactcttgtgttcta |
10317673 |
T |
|
| Q |
130 |
taaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaatttagattggatggacaattatcaacttgcaaccttcctagtgatgcaaag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10317672 |
taaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaatttagattggatggacaattatcaacttgcaaccttcctagtgatgcaaag |
10317573 |
T |
|
| Q |
230 |
gtaccctcttaattttatttcattttgttaccattttctattgatttagaaaaggaaaagatcaagcttttcaatagtttttaatttcaatataaaaatt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10317572 |
gtaccctcttaattttatttcattttgttaccattttctattgatttagaaaaggaaaagatcaagcttttcaatagtttttaatttcaatataaaaatt |
10317473 |
T |
|
| Q |
330 |
aatgcaatgttttattgaggttagttcattagttgaaaatgtttaatcattcttgcaaattagatgaattagagagacattacttgtgatcgatccactg |
429 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10317472 |
aatgtaatgttttattgaggttagtacattagttgaaaatgtttaatcattcttgcaaattagatgaattagagagacattacttgtgatcgatccattg |
10317373 |
T |
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| Q |
430 |
tacttgaattgcaaccgatcataattttcgcttcatca |
467 |
Q |
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| T |
10317372 |
tacttgaattgcaaacgatcataattttcgcttcatca |
10317335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 31606095 - 31606016
Alignment:
| Q |
107 |
atgaagaaaactcttgtgttctataaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaatttagatt |
186 |
Q |
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| T |
31606095 |
atgaagaaaaccctagtgttttataagggtagggctccaaggggtgagaaaagtaattgggtcatgcatgaatatagatt |
31606016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 3893374 - 3893452
Alignment:
| Q |
102 |
ttggtatgaagaaaactcttgtgttctataaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaatt |
180 |
Q |
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| T |
3893374 |
ttggaatgaagaaaacacttgttttctacaaaggaagagctcctaaaggtgaaaaaacaaattgggtcatgcatgaatt |
3893452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 30 - 189
Target Start/End: Original strand, 32991126 - 32991291
Alignment:
| Q |
30 |
caactgaatcaggctattggaaagcaactggaaaagataaagagatcta---caaagggaaaagtaaccaa---cttgttggtatgaagaaaactcttgt |
123 |
Q |
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|||||||||| || || |||||||| || |||||||| |||||||| || |||||| ||| | | |||| ||||||||||||||||| |||||||| |
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| T |
32991126 |
caactgaatctggttactggaaagctacaggaaaagacaaagagatttatcacaaaggaaaaggaatccaaaaccttgttggtatgaagaagactcttgt |
32991225 |
T |
|
| Q |
124 |
gttctataaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaatttagattgga |
189 |
Q |
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|||||||||||| |||||||||| ||||||||| || |||||||| ||||||||||| |||||||| |
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| T |
32991226 |
gttctataaaggaagagctccaaaaggagagaagactaattgggttatgcatgaattcagattgga |
32991291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 2924781 - 2924845
Alignment:
| Q |
125 |
ttctataaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaatttagattgga |
189 |
Q |
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||||| ||||| |||||||| ||||| || ||| |||| |||||||||||||||| |||||||| |
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| T |
2924781 |
ttctacaaaggaagagctccgagaggtgaaaaatccaactgggtcatgcatgaatacagattgga |
2924845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 45058932 - 45059075
Alignment:
| Q |
30 |
caactgaatcaggctattggaaagcaactggaaaagataaagagatctacaaagggaaaa-gtaaccaacttgttggtatgaagaaaactcttgtgttct |
128 |
Q |
| |
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|||| ||| |||| ||||||||||||||||| ||||||||||| || | |||||||||| || | ||||||||||||||||||||||| |||| |
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| T |
45058932 |
caacagaagcaggttattggaaagcaactgggaaagataaagaaattttcaaagggaaatcgt-------tggttggtatgaagaaaactcttgttttct |
45059024 |
T |
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| Q |
129 |
ataaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaat |
179 |
Q |
| |
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| T |
45059025 |
acaaaggaagagcacctaaaggagaaaaaagtaattgggtcatgcatgaat |
45059075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 11462990 - 11462904
Alignment:
| Q |
98 |
cttgttggtatgaagaaaactcttgtgttctataaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaatttaga |
184 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||| ||||| || | ||||||||||| |||||||| |||||||||| |||| |
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| T |
11462990 |
cttgttggaatgaagaaaactcttgttttctacaaaggaagagcacctaaaggagagaaaagtaattgggtaatgcatgaatataga |
11462904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 50580431 - 50580383
Alignment:
| Q |
131 |
aaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaat |
179 |
Q |
| |
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||||| |||||||| |||||||||||| ||||||||||||||||||| |
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| T |
50580431 |
aaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaat |
50580383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 1059333 - 1059411
Alignment:
| Q |
101 |
gttggtatgaagaaaactcttgtgttctataaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaat |
179 |
Q |
| |
|
|||||||||||||| ||| | || || || |||||| | ||||| ||||||||||||||||| ||||| |||||||||| |
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|
| T |
1059333 |
gttggtatgaagaagactttggttttttacaaaggtcgggctcctagaggagagaaaaccaactgggttatgcatgaat |
1059411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 32897676 - 32897757
Alignment:
| Q |
98 |
cttgttggtatgaagaaaactcttgtgttctataaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaat |
179 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||| ||| |||||||| | ||| || |||| || ||||| |||||||||| |
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| T |
32897676 |
cttgttggtatgaagaaaacccttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaat |
32897757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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