View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_low_1 (Length: 955)
Name: NF0727_low_1
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 748; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 93 - 935
Target Start/End: Original strand, 42067634 - 42068482
Alignment:
| Q |
93 |
tcatatatcacttgtttctttcactctaggctgtgactgttagtgaaaacgaaagagaaatattcttcaagcagacatgagctgtaatcgaggtacattc |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42067634 |
tcatatatcacttgtttctttcactctaggctgtgactgttagtgaaaacgaaagagaaatattcttcaagcagacatgagctgtaatcgaggtacattc |
42067733 |
T |
|
| Q |
193 |
ccatgttgtgtttccaaggaagagtaagaaaacaaaacaaaattttactaagagttttatatggaaattgttctagtgtgattccaaggttaaaattttt |
292 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42067734 |
ccatgttgtgtttccaaggaagagtaaggaaacaaaacaaaattttactaagagttttatatggaaattgttctagtgtgattccaaggttaaatttttt |
42067833 |
T |
|
| Q |
293 |
gtatgattatggatgtggcatgcatgagtaacattttgacaaataaaacggactataggt--ccccatgtatttccgtgttaattttattttttctgaag |
390 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
42067834 |
gtatgattatggatgtggcatgcatgtgtaacattttgacaaataaaacggactatagggtcccccatgtatttccgtgttcattttattttttctgaag |
42067933 |
T |
|
| Q |
391 |
aggggttttctaatttccttttat-aatatatggttgtgtgttgtacttgtaacacacttataattttgcatcatttaaattagttagtgaagttacgtg |
489 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42067934 |
aggggttttctaatttccttttattaatatatggttgtgtgttgtacttgtaatacacttataattttgcatcatttaaattagttagtgaagttacgtg |
42068033 |
T |
|
| Q |
490 |
ttagatttttgttgttgatggattattgcatactccacagaggtgcggtttatcatggaatttttcttcataatcatcggtacaaaataaaattattttt |
589 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42068034 |
ttagatttttgttgttgatggattattgcatactgcacagaggtgcggtttatcatggaatttttcttcataatcatcggtacaaaataaaattattttt |
42068133 |
T |
|
| Q |
590 |
taagcataaaattgggctttctttttacttctctcaaaatcactgcaaatctaataccttagttgaggatgtttcaaacatggaagtattgattggatcg |
689 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42068134 |
taagcataaaattgggctttctttttacttctctcaaaatcactgcaaatctaataccttagttgaggatgtttcaaacatggaagtattgattggatcg |
42068233 |
T |
|
| Q |
690 |
tggttgagaggtctatgtgaagcatatgtttatcgtgaagtaaatagtgttgttgattggtcaattggcaaactatactcagaatcaatacta--ctctc |
787 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42068234 |
tggttgagaggtctatgtgaagc--atgtttatcgtgaagtaaatagtgttgttgattggtcaattggcaaactatactcagaatcaatactaccctctc |
42068331 |
T |
|
| Q |
788 |
tatcttctatcacccctcaagtgggttgtatttttgtttgctcatgaag---ggagctcgggttccacgttgaatcaagggcaaccatataaatgattta |
884 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
42068332 |
tatcttctatcacccctcaagtgggttgtatttttgtttgatcatgaagggaggagctcgggttccacgttgaatcaagggcaatcatataaatgagtta |
42068431 |
T |
|
| Q |
885 |
aacataatattttaacgtaaaatcttaatacattttgtatatgggtcatct |
935 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
42068432 |
aacataatattttaacgtaaaatcttaagatattttgtatatgggtcatct |
42068482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 24871265 - 24871319
Alignment:
| Q |
97 |
atatcacttgtttctttcactctaggctgtgactgttagtgaaaacgaaagagaa |
151 |
Q |
| |
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|||||||| |||||||||| ||||||||||| ||| |||||||| ||||||||| |
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|
| T |
24871265 |
atatcactagtttctttcaagctaggctgtgattgtgagtgaaaatgaaagagaa |
24871319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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