View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0727_low_11 (Length: 481)

Name: NF0727_low_11
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0727_low_11
NF0727_low_11
[»] chr8 (7 HSPs)
chr8 (1-479)||(14003934-14004412)
chr8 (1-479)||(5766392-5766870)
chr8 (169-270)||(17635611-17635712)
chr8 (214-344)||(18314638-18314768)
chr8 (169-270)||(17642890-17642991)
chr8 (304-341)||(17643025-17643062)
chr8 (1-98)||(34935777-34935874)
[»] chr4 (10 HSPs)
chr4 (172-341)||(8186317-8186486)
chr4 (398-478)||(1481552-1481632)
chr4 (74-229)||(1481684-1481836)
chr4 (181-273)||(661855-661947)
chr4 (404-466)||(532630-532692)
chr4 (393-447)||(7225324-7225378)
chr4 (400-453)||(8186539-8186592)
chr4 (305-345)||(12124517-12124557)
chr4 (403-443)||(21833493-21833533)
chr4 (173-273)||(55907634-55907734)
[»] chr6 (5 HSPs)
chr6 (169-252)||(7132323-7132406)
chr6 (169-252)||(7135246-7135329)
chr6 (169-252)||(7138169-7138252)
chr6 (212-320)||(6403528-6403636)
chr6 (169-273)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (173-273)||(1036570-1036670)
[»] chr1 (3 HSPs)
chr1 (188-344)||(7555124-7555280)
chr1 (398-443)||(19467627-19467672)
chr1 (77-110)||(30827961-30827994)
[»] chr5 (1 HSPs)
chr5 (238-341)||(29021726-29021829)


Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 14004412 - 14003934
Alignment:
Q  1 ctctccgtcaccaactgtcacaaattctgtctaactatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004412 ctctccgtcaccaaccgtcacaaattctgtctaactatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccc 14004313  T
Q  101 tcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14004312 tcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaacc 14004213  T
Q  201 catccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctc 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004212 catccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctc 14004113  T
Q  301 catctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaatcattaatcacacacgtgctaccttctccactggactag 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14004112 catctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaatcattaatcacacacatgctaccttctccactggactag 14004013  T
Q  401 aggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttc 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004012 aggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttc 14003934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 5766392 - 5766870
Alignment:
Q  1 ctctccgtcaccaactgtcacaaattctgtctaactatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccc 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766392 ctctccgtcaccaaccgtcacaaattctgtctaactatcttgtatccagccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccc 5766491  T
Q  101 tcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaact 200  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5766492 tcgacctctcgtactattacggtgacctagatgcacttcttactcaaatctctagcttcccaatgttgaaactcacatcgctcaatctttccaaccaact 5766591  T
Q  201 catccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctc 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  5766592 catccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttatttctcttaatagcactgatatc 5766691  T
Q  301 catctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaatcattaatcacacacgtgctaccttctccactggactag 400  Q
    || ||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5766692 cacctcattgctgatacttttcctttgctagaagaacttgacctcgcttacccctctaaaatcattaatcacacacatgctaccttctccactggactag 5766791  T
Q  401 aggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttc 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766792 aggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttc 5766870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 17635611 - 17635712
Alignment:
Q  169 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 268  Q
    ||||||| ||| |||||||| ||||||||||||| | ||||  ||||||| || ||||||||||| ||||| ||||||||||||||||| || | |||||    
T  17635611 aaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgtt 17635710  T
Q  269 cc 270  Q
    ||    
T  17635711 cc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 344
Target Start/End: Original strand, 18314638 - 18314768
Alignment:
Q  214 aatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctg 313  Q
    ||||| || |||| ||||||||  || ||||||||||||||||||||    |||||  || || | |||||  || |||||||||||   ||||||||||    
T  18314638 aatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttcttacattcaatctctccatggcactgatctcttcctcattgctg 18314737  T
Q  314 attgttttcctttgctagaagaactcgacct 344  Q
    ||||||| |||||||| ||||||||||||||    
T  18314738 attgtttccctttgctcgaagaactcgacct 18314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 17642890 - 17642991
Alignment:
Q  169 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 268  Q
    ||||||||||| |||||||| |||||||| |||| | ||||  | ||||| || | ||||||||| | ||| ||||||||||||||||| || | |||||    
T  17642890 aaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgtt 17642989  T
Q  269 cc 270  Q
    ||    
T  17642990 cc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 17643025 - 17643062
Alignment:
Q  304 ctcattgctgattgttttcctttgctagaagaactcga 341  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  17643025 ctcatcgctgattgtttccctttgctagaagaactcga 17643062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 34935777 - 34935874
Alignment:
Q  1 ctctccgtcaccaactgtcacaaattctgtctaactatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctc 98  Q
    ||||||||||||||| |||||||||||| ||| ||||| |   ||| |||||| |||  ||| ||| |||| || |||||||| ||||| ||||||||    
T  34935777 ctctccgtcaccaaccgtcacaaattctctctcactatttctgatcaaaccctcccttcccttcctcgcctcttccaaaggtttaccaacctcacctc 34935874  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 341
Target Start/End: Original strand, 8186317 - 8186486
Alignment:
Q  172 ctcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttcca 271  Q
    |||||||| |||||||| || ||| ||| || | ||||||| ||||| ||||||| | |||| || || |||||||||||||||||||| |  |||||||    
T  8186317 ctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttcca 8186416  T
Q  272 accttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaagaactcga 341  Q
    || || | ||| | |||||||||||  ||   ||||| || |||||||||||||| ||||||||||||||    
T  8186417 acattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcga 8186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 478
Target Start/End: Complemental strand, 1481632 - 1481552
Alignment:
Q  398 tagaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgcttt 478  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||  |||| |||||| || ||||||||    
T  1481632 tagaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacgacattttgcttt 1481552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 1481836 - 1481684
Alignment:
Q  74 tacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaact 173  Q
    |||||||||||||||| ||||||||  | ||||| || | ||| ||   | |||||||||| ||||| || ||||||||  | |||||| ||   |||||    
T  1481836 tacaaaggttcaccaatctcacctcttttgacctttccttctactactttaacctcgatgcgcttctcacccaaatctcctgtttcccattg---aaact 1481740  T
Q  174 cacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctt 229  Q
    ||||||||||||| | || |||||||||| |||||| |||||||| ||||||||||    
T  1481739 cacatcgctcaatatctcaaaccaactcaaccttcccgctaatggcttgcgagctt 1481684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 661947 - 661855
Alignment:
Q  181 ctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaac 273  Q
    |||||||| |||||||||  || | |||| ||||||||||||||||||||||| |   | ||||||||||| ||||| || ||||||| ||||    
T  661947 ctcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgttacaac 661855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 466
Target Start/End: Complemental strand, 532692 - 532630
Alignment:
Q  404 ctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacg 466  Q
    ||||||||||| ||||  |||||||||||||||||||||| |||  ||||| |||| ||||||    
T  532692 ctctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacg 532630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 447
Target Start/End: Original strand, 7225324 - 7225378
Alignment:
Q  393 tggactagaggctctttcattagcactcatcaaactccgcaaggttaatctctct 447  Q
    |||| ||||||||||||||| ||||||  |||||||||| | |||||||||||||    
T  7225324 tggagtagaggctctttcatcagcacttttcaaactccgtagggttaatctctct 7225378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 8186539 - 8186592
Alignment:
Q  400 gaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcat 453  Q
    |||||||||||||| |||||  ||||||| |||||||||||||| ||| |||||    
T  8186539 gaggctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcat 8186592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 12124557 - 12124517
Alignment:
Q  305 tcattgctgattgttttcctttgctagaagaactcgacctc 345  Q
    |||||||||||||||| ||||| ||||||||||| ||||||    
T  12124557 tcattgctgattgtttccctttactagaagaacttgacctc 12124517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 443
Target Start/End: Original strand, 21833493 - 21833533
Alignment:
Q  403 gctctttcattagcactcatcaaactccgcaaggttaatct 443  Q
    ||||||||| | ||||| |||||||||||||||||||||||    
T  21833493 gctctttcacttgcacttatcaaactccgcaaggttaatct 21833533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 55907634 - 55907734
Alignment:
Q  173 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 272  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||  || || |||||||||||    
T  55907634 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T
Q  273 c 273  Q
    |    
T  55907734 c 55907734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 7132406 - 7132323
Alignment:
Q  169 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 252  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7132406 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 7135329 - 7135246
Alignment:
Q  169 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 252  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7135329 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 7138252 - 7138169
Alignment:
Q  169 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 252  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7138252 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 320
Target Start/End: Complemental strand, 6403636 - 6403528
Alignment:
Q  212 ctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgc 311  Q
    ||||||| |||||||||||||| || ||  | || ||||||||||| |||  ||||||| || || |||||||||||||| || |||||   ||||||||    
T  6403636 ctaatgggttgcgagctttctcccgaaaggtcactactttgacctctcttgattgttccgacattgattctcttaatagctctcatctcttactcattgc 6403537  T
Q  312 tgattgttt 320  Q
     ||||||||    
T  6403536 cgattgttt 6403528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 8913375 - 8913479
Alignment:
Q  169 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 268  Q
    |||||||||||||||||| | |||||||||   | | ||||||||||||| |||| || ||| |||   || ||||||||||||||||| || | |||||    
T  8913375 aaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgtt 8913474  T
Q  269 ccaac 273  Q
    |||||    
T  8913475 ccaac 8913479  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 1036570 - 1036670
Alignment:
Q  173 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 272  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||| || || |||||||||||    
T  1036570 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T
Q  273 c 273  Q
    |    
T  1036670 c 1036670  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 344
Target Start/End: Complemental strand, 7555280 - 7555124
Alignment:
Q  188 tttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaa 287  Q
    |||||||||||| || | | ||||| | ||| |||||||||||||| |  || ||||||||||| |||||||| | |||||||||  |  ||||| | ||    
T  7555280 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaa 7555181  T
Q  288 tagcactgatctccatctcattgctgattgttttcctttgctagaagaactcgacct 344  Q
    ||||| |||  |    ||||||||||| ||||| |||||||| ||||||||| ||||    
T  7555180 tagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 7555124  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 19467627 - 19467672
Alignment:
Q  398 tagaggctctttcattagcactcatcaaactccgcaaggttaatct 443  Q
    |||||||||||||| | |||||  ||||||||||||||||||||||    
T  19467627 tagaggctctttcacttgcacttctcaaactccgcaaggttaatct 19467672  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 30827994 - 30827961
Alignment:
Q  77 aaaggttcaccaaactcacctccctcgacctctc 110  Q
    ||||||||||||| ||||||||||||||||||||    
T  30827994 aaaggttcaccaatctcacctccctcgacctctc 30827961  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 341
Target Start/End: Complemental strand, 29021829 - 29021726
Alignment:
Q  238 aacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaagaac 337  Q
    |||||||| ||||||||||| || | ||||| | ||||| |  | || ||||||||| |||||  ||| ||||||||||| || |||||||| |||||||    
T  29021829 aacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctctttcttattgctgattgcttccctttgctcgaagaac 29021730  T
Q  338 tcga 341  Q
    ||||    
T  29021729 tcga 29021726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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