View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0727_low_12 (Length: 479)

Name: NF0727_low_12
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0727_low_12
NF0727_low_12
[»] chr6 (3 HSPs)
chr6 (29-264)||(35091745-35091980)
chr6 (284-451)||(35089971-35090137)
chr6 (157-285)||(19228492-19228620)
[»] chr2 (4 HSPs)
chr2 (28-139)||(9259579-9259689)
chr2 (31-137)||(17139937-17140043)
chr2 (49-131)||(31392295-31392377)
chr2 (157-256)||(39809469-39809568)
[»] chr3 (4 HSPs)
chr3 (31-139)||(1580996-1581105)
chr3 (31-139)||(41404207-41404316)
chr3 (94-139)||(3663805-3663850)
chr3 (157-261)||(41403985-41404089)
[»] chr1 (3 HSPs)
chr1 (49-139)||(3290493-3290583)
chr1 (31-131)||(32984385-32984486)
chr1 (157-300)||(32984613-32984756)
[»] chr7 (6 HSPs)
chr7 (31-139)||(30464521-30464630)
chr7 (31-125)||(8160939-8161032)
chr7 (157-296)||(30464263-30464402)
chr7 (31-139)||(39827621-39827730)
chr7 (159-291)||(8160678-8160810)
chr7 (157-263)||(39827396-39827502)
[»] chr5 (1 HSPs)
chr5 (201-296)||(12892984-12893079)
[»] chr8 (1 HSPs)
chr8 (93-139)||(12735469-12735515)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 35091980 - 35091745
Alignment:
Q  29 cgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttgg 128  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35091980 cgaattgctagagagaggggtttgcgaaggttgagttgcacgtcgattcgagtgtggtggtgtgtaccctgcacacaactaaggatggaagtgttgttgg 35091881  T
Q  129 ttgacgtctcaatcnnnnnnntcactgagttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaac 228  Q
    ||||||||||||||       |||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||    
T  35091880 ttgacgtctcaatcaaaaaaatcactgagttgcgtgtgtatgagtagtgtccaattaggcttaattctttggtgttagctgatgttatcgagataacaac 35091781  T
Q  229 ccctaaaatcatctatgtttagttttctcttttctc 264  Q
     |||||||||||||||||||||||||||||||||||    
T  35091780 tcctaaaatcatctatgtttagttttctcttttctc 35091745  T

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Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 284 - 451
Target Start/End: Complemental strand, 35090137 - 35089971
Alignment:
Q  284 tcccaaaataaaaatatcttaaagcactgattaacaataccaaaagtatgaagatatatatcaaacgtaaataaaggtaatttcatgtctgcttaaaaga 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35090137 tcccaaaataaaaatatcttaaagcactgattaacaataccaaaagtatgaagatatatatcaaacgtaaataaaggtaatttcatgt-tgcttaaaaga 35090039  T
Q  384 aagtaaatgtactatgtactcataacacattaagatagctaaaaataagaagaagaaaagtaaaacat 451  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35090038 aagtaaatgtactgtgtactcataacacattaagatagctaaaaataagaagaagaaaagtaaaacat 35089971  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 19228492 - 19228620
Alignment:
Q  157 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 256  Q
    ||||| |||||||||| | ||||||| ||| ||||  ||| |||||||| |||||||||| |  ||||  ||||||| | |||||| |||||| ||||||    
T  19228492 gttgcgtgtgtatgagcaatgtccaactaggcttagttctctggtgttagctgatgttatgggaataatgacccctagattcatctctgtttaattttct 19228591  T
Q  257 cttttctcatacttaggtctctttgtttc 285  Q
    ||||||||   |||||| |||||||||||    
T  19228592 cttttctcgagcttaggcctctttgtttc 19228620  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 9259689 - 9259579
Alignment:
Q  28 ccgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttg 127  Q
    |||||||||||||||||||  ||||||||||||||||| || || |||||||||||||||||| | || ||| |||||||||||||||||||||||||||    
T  9259689 ccgaattgctagagagaggt-tttgcgaaggttgagttacacgttgattcgagtgtggtggtgaggactctgtagacaactaaggatggaagtgttgttg 9259591  T
Q  128 gttgacgtctca 139  Q
    |||| |||||||    
T  9259590 gttggcgtctca 9259579  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 17140043 - 17139937
Alignment:
Q  31 aattgctagagagaggggtttg-cgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    ||||||||||||||| |||||  ||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  17140043 aattgctagagagagaggtttttcgaaggttgagttacatgttgattcgagtgtggtggtgtggactctgcagacaactaaggatggaagtgtt-ttggt 17139945  T
Q  130 tgacgtct 137  Q
    || |||||    
T  17139944 tggcgtct 17139937  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 31392295 - 31392377
Alignment:
Q  49 tttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttg 131  Q
    ||||| |||||||||||||| |  ||||| ||||| |||||| | |||||||||| |||||||||||||||| ||||||||||    
T  31392295 tttgcaaaggttgagttgcacgctgattcaagtgtagtggtgcggaccctgcagataactaaggatggaagtattgttggttg 31392377  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 39809469 - 39809568
Alignment:
Q  157 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 256  Q
    ||||| ||||||||||||||||| | |||| ||||  | |  |||||||||| ||||||| | |||| | ||||||| | |||||| |||||||||||||    
T  39809469 gttgcgtgtgtatgagtagtgtctagttaggcttagttatccggtgttaactaatgttatggggatagcgacccctagagtcatctctgtttagttttct 39809568  T

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Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 1580996 - 1581105
Alignment:
Q  31 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    ||||||||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  1580996 aattgctagagagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctacagacaactaaggatggaagtgttgttggt 1581095  T
Q  130 tgacgtctca 139  Q
    || |||||||    
T  1581096 tggcgtctca 1581105  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 41404316 - 41404207
Alignment:
Q  31 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    ||||| ||||||||| ||||| ||||||||||||||||| || |||| |||||||||||||  ||||||||| |||||| ||||||||||||||||||||    
T  41404316 aattgttagagagagaggttttgcgaaggttgagttgcatgttgatttgagtgtggtggtgcataccctgcaaacaacttaggatggaagtgttgttggt 41404217  T
Q  130 tgacgtctca 139  Q
    || |||||||    
T  41404216 tggcgtctca 41404207  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 3663850 - 3663805
Alignment:
Q  94 accctgcagacaactaaggatggaagtgttgttggttgacgtctca 139  Q
    |||||||| |||||||| |||||||||||||||||||| |||||||    
T  3663850 accctgcaaacaactaaagatggaagtgttgttggttggcgtctca 3663805  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 41404089 - 41403985
Alignment:
Q  157 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 256  Q
    ||||||||||||||| |||||||||  ||||||||  ||| |||||||| || |||||||   |||| | || |||| | || ||| ||| |||||||||    
T  41404089 gttgcatgtgtatgactagtgtccagctagacttagttctctggtgttagcttatgttatgtggatagcgactcctagagtcgtctctgtctagttttct 41403990  T
Q  257 ctttt 261  Q
    |||||    
T  41403989 ctttt 41403985  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 3290493 - 3290583
Alignment:
Q  49 tttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttgacgtctca 139  Q
    |||||||||||||||||||| || |||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||| |||||||    
T  3290493 tttgcgaaggttgagttgcacgttgattcgagtgtggttgtgcgtaccctgcagacaatcaaggatggaagtgttgttggttggcgtctca 3290583  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 32984385 - 32984486
Alignment:
Q  31 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    |||||||||| |||| ||||| || |||||||||||||| || ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  32984385 aattgctagacagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctgcagacaactaaggatggaagtgttgttggt 32984484  T
Q  130 tg 131  Q
    ||    
T  32984485 tg 32984486  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 300
Target Start/End: Original strand, 32984613 - 32984756
Alignment:
Q  157 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 256  Q
    ||||| |||||||||| | ||||||  ||| ||||  ||| ||||||||  ||||||||| | |||| ||||||||| | |||||| |||||| ||||||    
T  32984613 gttgcgtgtgtatgagcaatgtccagctaggcttagttctctggtgttagttgatgttatggggatagcaacccctagagtcatctctgtttaattttct 32984712  T
Q  257 cttttctcatacttaggtctctttgtttcccaaaataaaaatat 300  Q
    ||||| ||   |||| | | ||||||||||||||  ||||||||    
T  32984713 cttttttcgggcttaagcccctttgtttcccaaacaaaaaatat 32984756  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 30464630 - 30464521
Alignment:
Q  31 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    ||||||||||||||| ||||| || || ||||||||||| ||  |||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  30464630 aattgctagagagagaggttttgcaaaagttgagttgcacgttaattcaagtgtggtggtgcataccctgcagacaactaagaatggaagtgttgttggt 30464531  T
Q  130 tgacgtctca 139  Q
    || |||||||    
T  30464530 tggcgtctca 30464521  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 8161032 - 8160939
Alignment:
Q  31 aattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgt 125  Q
    |||| |||||||||||  ||||| || |||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||| ||||||||||    
T  8161032 aatttctagagagaggt-tttgcaaaagttgagttgcaagttgattcaagtgtggtggtgcataccctgcagacaactaaggatagaagtgttgt 8160939  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 30464402 - 30464263
Alignment:
Q  157 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 256  Q
    ||||| |||||||||||||||||||  ||| ||||  ||| |||||||| |||||||||| | |||| | ||||||||| |||||| |||||  ||||||    
T  30464402 gttgcgtgtgtatgagtagtgtccagctaggcttatttctctggtgttagctgatgttatggggatagcgacccctaaagtcatctttgtttgattttct 30464303  T
Q  257 cttttctcatacttaggtctctttgtttcccaaaataaaa 296  Q
    ||||||||   |||||| | ||||||||| ||||| ||||    
T  30464302 cttttctcgagcttaggcccctttgtttctcaaaaaaaaa 30464263  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 39827730 - 39827621
Alignment:
Q  31 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    ||||||||||||||| ||||| || || |||||||| || || ||||||||||||||||||  || | |||| ||||||||||||||| |||||| ||||    
T  39827730 aattgctagagagagaggtttagcaaaagttgagtttcacgttgattcgagtgtggtggtgcatagcttgcaaacaactaaggatggaggtgttgctggt 39827631  T
Q  130 tgacgtctca 139  Q
    || |||||||    
T  39827630 tggcgtctca 39827621  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 291
Target Start/End: Complemental strand, 8160810 - 8160678
Alignment:
Q  159 tgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttctct 258  Q
    ||||||||| |||| ||||||||  ||  ||||  ||| |||||||| |||||||||| | ||||   ||||||| | |||||| | |||||||||||||    
T  8160810 tgcatgtgtctgagcagtgtccagctaagcttagttctctggtgttagctgatgttatggggatagtgacccctagagtcatctctatttagttttctct 8160711  T
Q  259 tttctcatacttaggtctctttgtttcccaaaa 291  Q
    |||||| | |||||| | |||||||||||||||    
T  8160710 tttctcgtgcttaggcccctttgtttcccaaaa 8160678  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 39827502 - 39827396
Alignment:
Q  157 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 256  Q
    ||||| |||||||||| |||||| || ||||||||  | | || |||||  ||||||||| | |||| | ||||||| | |||||| |||||||||||||    
T  39827502 gttgcgtgtgtatgagcagtgtcaaactagacttagttatctgatgttagttgatgttatagggatagcgacccctagagtcatctctgtttagttttct 39827403  T
Q  257 cttttct 263  Q
     ||||||    
T  39827402 tttttct 39827396  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 296
Target Start/End: Complemental strand, 12893079 - 12892984
Alignment:
Q  201 tgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttctcttttctcatacttaggtctctttgtttcccaaaataaaa 296  Q
    ||||| |||||||||| | |||||| ||| ||||| || ||| | |||||||||||| |||||||  |||||||| |||||||||| |||| ||||    
T  12893079 tgttagctgatgttatggggataacgacctctaaagtcgtctctatttagttttctcctttctcaagcttaggtccctttgtttccaaaaaaaaaa 12892984  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 12735515 - 12735469
Alignment:
Q  93 taccctgcagacaactaaggatggaagtgttgttggttgacgtctca 139  Q
    |||||| || |||||||| |||| |||||||||||||||||||||||    
T  12735515 taccctacaaacaactaaagatgaaagtgttgttggttgacgtctca 12735469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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