View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_low_17 (Length: 435)
Name: NF0727_low_17
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_17 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 9805069 - 9804675
Alignment:
| Q |
1 |
agaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattaga |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9805069 |
agaaatccatgtgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaatttga |
9804970 |
T |
|
| Q |
101 |
gaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaac |
200 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
9804969 |
gaaagacatgcaaaatgatctagataaaaaaa-atatgaaaaaagtttggattacctttcttgcccaaataatgaaacgaggttgaactttcatgaaaac |
9804871 |
T |
|
| Q |
201 |
tccatcaaaagagataaccattcatgagaggttggcaacggcgactggtcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9804870 |
tccatcaaaagagataaccattcatgagaggttggcaacggcgactgatcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcga |
9804771 |
T |
|
| Q |
301 |
tctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggagga |
396 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9804770 |
tctcagtgatggtgcttggagagaggttggcaacagcgattgagggagaaaattgtgtttagggtttcaagagaatgagaaatgaggatgggagga |
9804675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9817994 - 9817777
Alignment:
| Q |
1 |
agaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattaga |
100 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
9817994 |
agaaatccatgtgtagataataaattaaaataaaatccatgtatttatcacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcaga |
9817895 |
T |
|
| Q |
101 |
gaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaac |
200 |
Q |
| |
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|||||||||||||||||||| |||| || || ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9817894 |
gaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgcccaaataatggaacgaggttgaagtttcatgaaaat |
9817797 |
T |
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| Q |
201 |
tccatcaaaagagataacca |
220 |
Q |
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|||||||||||||||||||| |
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| T |
9817796 |
tccatcaaaagagataacca |
9817777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 281 - 423
Target Start/End: Complemental strand, 9817693 - 9817550
Alignment:
| Q |
281 |
ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga |
380 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
9817693 |
ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga |
9817594 |
T |
|
| Q |
381 |
aatgaggatgggaggattattttgtttga-tgatgtccatctca |
423 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||||| |||||| |
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| T |
9817593 |
aatgaggatgggaggattcttttgtttgattgatgtcgatctca |
9817550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 278 - 410
Target Start/End: Complemental strand, 9817577 - 9817445
Alignment:
| Q |
278 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
377 |
Q |
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||||||| | |||| ||||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
9817577 |
ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg |
9817478 |
T |
|
| Q |
378 |
agaaatgaggatgggaggattattttgtttgat |
410 |
Q |
| |
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|||||||||||| |||||||| ||||| ||||| |
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| T |
9817477 |
agaaatgaggattggaggattcttttgattgat |
9817445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 288 - 396
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
| Q |
288 |
tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg |
387 |
Q |
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|
||||||||||||||| ||| ||||||| || |||||||||||||| ||||| |||||||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
9817448 |
tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg |
9817350 |
T |
|
| Q |
388 |
atgggagga |
396 |
Q |
| |
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||||||||| |
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| T |
9817349 |
atgggagga |
9817341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 9806742 - 9806792
Alignment:
| Q |
19 |
aataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaa |
69 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9806742 |
aataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaa |
9806792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 11987 - 11788
Alignment:
| Q |
17 |
ataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaat |
116 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
11987 |
ataataaaataaaataaaattcatgtatttattacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaat |
11888 |
T |
|
| Q |
117 |
gatcaagatnnnnnnntatatg-aaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat |
215 |
Q |
| |
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|| |||| || || ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11887 |
tatatagataaaaca--atgtgaaaaaaagttaagattaccttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat |
11790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 410
Target Start/End: Complemental strand, 11708 - 11572
Alignment:
| Q |
274 |
atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag |
373 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||||||| || |||||||||||| | ||| ||||| || |||| ||||||| | | |||||||| |
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| T |
11708 |
atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag |
11609 |
T |
|
| Q |
374 |
aatgagaaatgaggatgggaggattattttgtttgat |
410 |
Q |
| |
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|||| ||| |||||||||||||||| ||||||||||| |
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|
| T |
11608 |
aatgggaagtgaggatgggaggattcttttgtttgat |
11572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 396
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
| Q |
278 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
377 |
Q |
| |
|
||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || || ||||||||||| | ||| | || ||||| |||||| |
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|
| T |
11585 |
ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata |
11486 |
T |
|
| Q |
378 |
agaaatgaggatgggagga |
396 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
11485 |
agaaatgaggatgggagga |
11467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
| Q |
66 |
gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc |
165 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| |||| || |||||||||||||||||||||||||||| |
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| T |
42778749 |
gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct |
42778846 |
T |
|
| Q |
166 |
caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
220 |
Q |
| |
|
||| | |||||||||||||||| || |||||||||||| |||||||||||||||| |
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|
| T |
42778847 |
caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca |
42778900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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