View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0727_low_18 (Length: 424)
Name: NF0727_low_18
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 4903687 - 4903357
Alignment:
| Q |
1 |
cttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903687 |
cttacaccagaccttaccaaccccttcgcaatgaagaaaaatatgtgttgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggt |
4903588 |
T |
|
| Q |
101 |
gggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttcc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4903587 |
gggagcgagtttcttatagcaaggttgatctttgttgggattctatcgtgaagaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttcc |
4903488 |
T |
|
| Q |
199 |
aaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcacc |
298 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903487 |
aaatatgcgagaaaaccttcctcgggagaccatcaagatcttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcacc |
4903388 |
T |
|
| Q |
299 |
ttcctcttccaacctccaaatccaatcatcc |
329 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
4903387 |
ttcctcatccaacctccaaatccaatcatcc |
4903357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 1556905 - 1556832
Alignment:
| Q |
257 |
tgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatcct |
330 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||| ||||| |
|
|
| T |
1556905 |
tgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctccacttccaatgatcct |
1556832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 1557054 - 1556987
Alignment:
| Q |
110 |
tttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccac |
177 |
Q |
| |
|
||||| || ||||||||| ||||||| || |||||||| || ||||||||||||| |||||||||||| |
|
|
| T |
1557054 |
tttctaattgcaaggttggtctttgtaggaattctatcgtggagaagtttccaagaaaaaaccaccac |
1556987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 22153870 - 22154179
Alignment:
| Q |
1 |
cttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
22153870 |
cttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaattgttgcaccaaacacactgaagagagctatccggt |
22153969 |
T |
|
| Q |
101 |
gggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttcc |
198 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
22153970 |
gggagcgagttccttatagcaaggttgatctttgttgggattc---------------------taaaaaccatcacttccgacggtgccgggctcttcc |
22154048 |
T |
|
| Q |
199 |
aaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcacc |
298 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||| |
|
|
| T |
22154049 |
aaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaatttagaataaatttattttattgacaaagcacc |
22154148 |
T |
|
| Q |
299 |
ttcctcttccaacctccaaatccaatcatcc |
329 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
22154149 |
ttcctcatccaacctccaaatccaatcatcc |
22154179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 22209785 - 22210094
Alignment:
| Q |
1 |
cttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
22209785 |
cttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaattgttgcaccaaacacactgaagagagctatccggt |
22209884 |
T |
|
| Q |
101 |
gggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttcc |
198 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
22209885 |
gggagcgagttccttatagcaaggttgatctttgttgggattc---------------------taaaaaccatcacttccgacggtgccgggctcttcc |
22209963 |
T |
|
| Q |
199 |
aaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcacc |
298 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||| |
|
|
| T |
22209964 |
aaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaatttagaataaatttattttattgacaaagcacc |
22210063 |
T |
|
| Q |
299 |
ttcctcttccaacctccaaatccaatcatcc |
329 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
22210064 |
ttcctcatccaacctccaaatccaatcatcc |
22210094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 316
Target Start/End: Original strand, 34821645 - 34821847
Alignment:
| Q |
116 |
atagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttccaaatatgcgagaaaa |
213 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| || | |||| ||||||| ||| |||| || | |
|
|
| T |
34821645 |
atagcaaggttgatttttgttgggattctatcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaaca |
34821744 |
T |
|
| Q |
214 |
ccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacct |
313 |
Q |
| |
|
|||||||| | | | |||| || || | |||||||||||||||| ||||||||||||||||||||||||| || || ||||| |||||||| |
|
|
| T |
34821745 |
ccctcctctccccatcttgaagattgtcaaccggcaccatcaatgtttccaatctagaatacattgattttaccgaaaaggccccatcctcctccaacct |
34821844 |
T |
|
| Q |
314 |
cca |
316 |
Q |
| |
|
||| |
|
|
| T |
34821845 |
cca |
34821847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 53561944 - 53561813
Alignment:
| Q |
186 |
gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgatttta |
285 |
Q |
| |
|
||||| ||||||||||||||| || ||||||||| || ||||||| | || ||||| | |||||||||||||||||| |||||||| ||||| | |
|
|
| T |
53561944 |
gccggactcttccaaatatgcttaaacaccctcctctctagttcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaa |
53561845 |
T |
|
| Q |
286 |
ccgaaaaagcaccttcctcttccaacctccaa |
317 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||| |
|
|
| T |
53561844 |
ccgaaaaagtaccgtcctcttccaaactccaa |
53561813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4739 times since January 2019
Visitors: 4839