View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_low_19 (Length: 422)
Name: NF0727_low_19
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 4 - 394
Target Start/End: Complemental strand, 3324518 - 3324122
Alignment:
| Q |
4 |
gaagagaagagctattcagaagtttacgaagaatgacattgctgagcttcttaggagtggacatgattatgatgcatataaaagggtaacattctctttt |
103 |
Q |
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| T |
3324518 |
gaagagaagagctattcagaagtttacgaagaatgacattgctgagcttcttaggagtggacatgattatgatgcatataaaagggtaatattctctttt |
3324419 |
T |
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| Q |
104 |
caccattaaattttgcatacaagtattgttgtatt--------ttatgcacatgacaataaattaaacatcggcacaaacgtcaaacacgacactgatac |
195 |
Q |
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| T |
3324418 |
caccattaaattttgcatacaagtattgttgtattgattcatattatgcacatgacaataaattaaatatcggcacaaacgtcaaacacgacactgatac |
3324319 |
T |
|
| Q |
196 |
taacatgcagactttagtaataatttgagaaaatagaactgattatacatgtaaaagcgttgtgtcggtgttggaacacttgtcgggcatgtgatatgct |
295 |
Q |
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| T |
3324318 |
taacatgtagacttcagtaataatttgagaaaatagaactgatta--catgtaacggcgttgtgtcggtgttggaacacttgtcggacatgtgatatact |
3324221 |
T |
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| Q |
296 |
tttaatctgaagtgtcgaagctatttttgcatttgaagcagactgaagggcttctgtttgaggaaaaaatattatcctgctatgaattcattgaaaagt |
394 |
Q |
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| T |
3324220 |
tttaatctgaagtgtcgaagctatttttgtatttgaagcagactgaagggcttctgtttgaggaaaaaatattatcctgctatgaattcattgaaaagt |
3324122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 8013924 - 8013863
Alignment:
| Q |
178 |
caaacacgacactgatactaacatgcagactttagtaataatttgagaaaatagaactgatt |
239 |
Q |
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| T |
8013924 |
caaacacgacactgatactaacatgtagacactagtaataatttgaaaaaatataagtgatt |
8013863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 1116368 - 1116428
Alignment:
| Q |
180 |
aacacgacactgatactaacatgcagactttagtaataatttgagaaaatagaactgatta |
240 |
Q |
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||||| ||||||| ||||||||| |||| || |||||||||||||||||| ||| |||||| |
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| T |
1116368 |
aacacaacactgacactaacatgtagacattggtaataatttgagaaaattgaagtgatta |
1116428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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