View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_low_20 (Length: 392)
Name: NF0727_low_20
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 41819741 - 41820084
Alignment:
| Q |
20 |
gacatcatcaaatacaaaggccaaacagttcaggggttgagtgagtgctacaaactggaaagagagttaatatgaatgtaagttccactttttaaggggt |
119 |
Q |
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| T |
41819741 |
gacaccatcaaatacaaaggccaaacagttcaggggttgagtgagtgctacaaactggaaagagagttaatatgaatgtaagttccactttttaaggggt |
41819840 |
T |
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| Q |
120 |
ttgagaatttaaattatcaatataacctttccaaatttgaacacgaataaattaccgggaccccaactctaatgaggtggaggacatcaatatcttttgt |
219 |
Q |
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| T |
41819841 |
ttgaaaatttaaattatcaatataacctttccaaatttgaacacgaataaattaccgggaccccaactctaatgaggtggaggacatcaatatcttttgt |
41819940 |
T |
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| Q |
220 |
aaataatttagctccaaagtgcaatcctgttccaagaatgaatgcaagtgccaatccaagaaccatgcccatctgcattataactatctacctcatttac |
319 |
Q |
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| T |
41819941 |
aaataatttagctccaaagtgcaatcctgttccaagaatgaatgcaagtgccaatccaagaaccatgcccatctgcattataactatctacctcatttac |
41820040 |
T |
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| Q |
320 |
aactcaatgtattattcaaaaagcaattagcgagcggcgtttat |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41820041 |
aactcaatgtattattcaaaaagcaattagcgagcggcgtttat |
41820084 |
T |
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