View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0727_low_21 (Length: 375)
Name: NF0727_low_21
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_21 |
 | |
|
| [»] scaffold0014 (6 HSPs) |
| | |
|
| [»] scaffold1270 (2 HSPs) |
| | |
|
| [»] scaffold1635 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 3 - 364
Target Start/End: Original strand, 46076140 - 46076510
Alignment:
| Q |
3 |
tcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatctc |
102 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46076140 |
tcaaacacccctcatactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatctc |
46076239 |
T |
|
| Q |
103 |
cctttgcatctcaaaattcctcacttgagtcatctgctagt---------tctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtca |
193 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46076240 |
cctctgcatctcaaaattcctcacctgagtcatctgctagtgttactagctctcagtcttctcctcctgttcctcacagaattcatcctcaaaatcgtca |
46076339 |
T |
|
| Q |
194 |
cacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaaccctacactccttttgactcatgttgagcccactacttacaaaaatgctctt |
293 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46076340 |
cacaatgagaaccagaggtaaacatggaattgtgcagcctagaattaaccctacactccttttgactcatgttgagcccactacttacaaaactgctctt |
46076439 |
T |
|
| Q |
294 |
caggatcctaagtgggatttagcaatgcaagaagaatataatgctttacttaataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46076440 |
caggatcctaagtggcatttagcaatgcaagaagaatataatgctttacttcttaatcagacatggtctct |
46076510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 364
Target Start/End: Complemental strand, 38325095 - 38324865
Alignment:
| Q |
134 |
atctgctagttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagccc |
233 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38325095 |
atctactaattctgagtctcctcctcctgttcctcacagaattcatcctcaaaactgtcacacaatgagaaccagaggtaaacatggaattgtgcagccc |
38324996 |
T |
|
| Q |
234 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatata |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38324995 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatata |
38324896 |
T |
|
| Q |
334 |
atgctttacttaataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
38324895 |
atgctttacttcataatcagacatggtctct |
38324865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 146 - 364
Target Start/End: Complemental strand, 33824838 - 33824620
Alignment:
| Q |
146 |
tgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaaccct |
245 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33824838 |
tgagtctcctccttctgttcctcacagaattcatcctcaaaaccgtcacacaatgagaaccagaggtaaacatggaattgtgcagcccataattaaccct |
33824739 |
T |
|
| Q |
246 |
acactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgctttactta |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824738 |
acactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatataatgctttacttc |
33824639 |
T |
|
| Q |
346 |
ataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33824638 |
ataatcagacatggtctct |
33824620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 143 - 364
Target Start/End: Original strand, 55491508 - 55491729
Alignment:
| Q |
143 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaac |
242 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
55491508 |
ttctgagtctcctcctccggttcctcacagaattcatcctcataaccgtcacacaatgagaaccagaggtaaacatggaattttgcagcctaggattaac |
55491607 |
T |
|
| Q |
243 |
cctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgctttac |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
55491608 |
cctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatggaagaagaatataatgctttac |
55491707 |
T |
|
| Q |
343 |
ttaataatcagacatggtctct |
364 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
55491708 |
ttcataatcagacatggtctct |
55491729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38325252 - 38325110
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38325252 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
38325153 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38325152 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
38325110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 55491342 - 55491484
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
55491342 |
tatcaaacgcccctcagactccatctattagttctcatcactccgagtcttcacacagaaataatgttgttctaaatcccacacccatcaccattctatc |
55491441 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55491442 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
55491484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 33825007 - 33824865
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||| | ||||||| |||||||| |
|
|
| T |
33825007 |
tatcaaacacctctcagactccatctattagttctcatcactcccagtcctcacacagaaataatgttgtcctaaatcccataaccatcaccattctatc |
33824908 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
33824907 |
tccctttgcatatcaaaattcctcacctgagtcatctgctagt |
33824865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 3715846 - 3715466
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
3715846 |
tatcaaacacccctcatactccatctattagttctcatcactccgagtcctcacacaaaaataatgttgttctaaatcccacacccatcaccattctatc |
3715747 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt---------tctgagtctcc---tcctc-----ctgttcctcacagaattcatcctc |
183 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| ||| ||||| | | || |||||||||||||||||||||||| |
|
|
| T |
3715746 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagtgttactagctctcagtctacaaattctgagtctctgttcctcacagaattcatcctc |
3715647 |
T |
|
| Q |
184 |
aaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaaccctacactccttttgactcatgttgagcccactacttacaa |
283 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3715646 |
aaaaccgtcacacaatgagaaccagaggtaaacatggaattgtgcagcctagaattaaccctacactccttttgactcatgttgcgcccactacttacaa |
3715547 |
T |
|
| Q |
284 |
aaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgc---tttacttaataatcagacatggtc |
361 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
3715546 |
aactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatataatgcttttttacttcataatcagacatggtc |
3715466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 364
Target Start/End: Complemental strand, 48510836 - 48510606
Alignment:
| Q |
134 |
atctgctagttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagccc |
233 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48510836 |
atctactaattctgagtctcctcctcctgttcctcacagaattcatcctcaaaactgtcacacaatgagaaccagaggtaaacatggaattgtgcagccc |
48510737 |
T |
|
| Q |
234 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatata |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48510736 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatata |
48510637 |
T |
|
| Q |
334 |
atgctttacttaataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
48510636 |
atgctttacttcataatcagacatggtctct |
48510606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 143 - 364
Target Start/End: Complemental strand, 48725269 - 48725048
Alignment:
| Q |
143 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaac |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48725269 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaactctcacacaatgagaaccagaggtaaacatggaattgtgcagcccagaattaac |
48725170 |
T |
|
| Q |
243 |
cctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgctttac |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48725169 |
cctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatataatgctttac |
48725070 |
T |
|
| Q |
343 |
ttaataatcagacatggtctct |
364 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
48725069 |
ttcataatcagacatggtctct |
48725048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 48510993 - 48510851
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48510993 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
48510894 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48510893 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
48510851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 48725435 - 48725293
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48725435 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
48725336 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48725335 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
48725293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 234 - 364
Target Start/End: Original strand, 42108160 - 42108290
Alignment:
| Q |
234 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatata |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42108160 |
agaattaaccctacactccttttgactcatgttgagcccacttcttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatata |
42108259 |
T |
|
| Q |
334 |
atgctttacttaataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
42108260 |
atgctttacttcataatcagacatggtctct |
42108290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 42107879 - 42108021
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42107879 |
tatcaaacacccctcagactccatccattagttctcatcattccgagtcctcacacaaaaataatgtggtcctaaatcccacacccatcaccattctatc |
42107978 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
42107979 |
tccctctgcatctcaaaattcctcacctgagtaatctgctagt |
42108021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 42108049 - 42108160
Alignment:
| Q |
147 |
gagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaacccta |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42108049 |
gagtctcctcctcctgttcctcacagaattcatcctcaaaaccgtcacacaatgagaaccataggcaaacatggaattgtgcagcccagaattaacccta |
42108148 |
T |
|
| Q |
247 |
cactccttttga |
258 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42108149 |
cactccttttga |
42108160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 364
Target Start/End: Original strand, 162252 - 162482
Alignment:
| Q |
134 |
atctgctagttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagccc |
233 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
162252 |
atctactaattctgagtctcctcctcctgttcctcacagaattcatcctcaaaactgtcacacaatgagaaccagaggtaaacatggaattgtgcagccc |
162351 |
T |
|
| Q |
234 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatata |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
162352 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatata |
162451 |
T |
|
| Q |
334 |
atgctttacttaataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
162452 |
atgctttacttcataatcagacatggtctct |
162482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 364
Target Start/End: Original strand, 171554 - 171784
Alignment:
| Q |
134 |
atctgctagttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagccc |
233 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
171554 |
atctactaattctgagtctcctcctcctgttcctcacagaattcatcctcaaaactgtcacacaatgagaaccagaggtaaacatggaattgtgcagccc |
171653 |
T |
|
| Q |
234 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatata |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
171654 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatata |
171753 |
T |
|
| Q |
334 |
atgctttacttaataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
171754 |
atgctttacttcataatcagacatggtctct |
171784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 364
Target Start/End: Original strand, 176398 - 176628
Alignment:
| Q |
134 |
atctgctagttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagccc |
233 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
176398 |
atctactaattctgagtctcctcctcctgttcctcacagaattcatcctcaaaactgtcacacaatgagaaccagaggtaaacatggaattgtgcagccc |
176497 |
T |
|
| Q |
234 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatata |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
176498 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatata |
176597 |
T |
|
| Q |
334 |
atgctttacttaataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
176598 |
atgctttacttcataatcagacatggtctct |
176628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 162095 - 162237
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
162095 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
162194 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
162195 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
162237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 171397 - 171539
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
171397 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
171496 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
171497 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
171539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 176241 - 176383
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
176241 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
176340 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
176341 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
176383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 364
Target Start/End: Original strand, 29654659 - 29654889
Alignment:
| Q |
134 |
atctgctagttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagccc |
233 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29654659 |
atctactaattctgagtctcctcctcctgttcctcacagaattcatcctcaaaactgtcacacaatgagaaccagaggtaaacatggaattgtgcagccc |
29654758 |
T |
|
| Q |
234 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatata |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29654759 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatata |
29654858 |
T |
|
| Q |
334 |
atgctttacttaataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
29654859 |
atgctttacttcataatcagacatggtctct |
29654889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 29654502 - 29654644
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29654502 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
29654601 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29654602 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
29654644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 364
Target Start/End: Complemental strand, 36676367 - 36676137
Alignment:
| Q |
134 |
atctgctagttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagccc |
233 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36676367 |
atctactaattctgagtctcctcctcctgttcctcacagaattcatcctcaaaactgtcacacaatgagaaccagaggtaaacatggaattgtgcagccc |
36676268 |
T |
|
| Q |
234 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatata |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36676267 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatata |
36676168 |
T |
|
| Q |
334 |
atgctttacttaataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
36676167 |
atgctttacttcataatcagacatggtctct |
36676137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 143 - 364
Target Start/End: Original strand, 36665417 - 36665638
Alignment:
| Q |
143 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaac |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36665417 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaactctcacacaatgagaaccagaggtaaacatggaattgtgcagcccagaattaac |
36665516 |
T |
|
| Q |
243 |
cctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgctttac |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36665517 |
cctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatataatgctttac |
36665616 |
T |
|
| Q |
343 |
ttaataatcagacatggtctct |
364 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
36665617 |
ttcataatcagacatggtctct |
36665638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 146 - 308
Target Start/End: Original strand, 43562905 - 43563067
Alignment:
| Q |
146 |
tgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaaccct |
245 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
43562905 |
tgagtctcctcctcctattcctcacagaattcatcctcaaaaccgtcactcaatgagaaccagaggtaaacatggaattgtgtagcctagaattaaccct |
43563004 |
T |
|
| Q |
246 |
acactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43563005 |
acactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtgg |
43563067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 36665251 - 36665393
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36665251 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
36665350 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36665351 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
36665393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 36676524 - 36676382
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36676524 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
36676425 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36676424 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
36676382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 43562752 - 43562878
Alignment:
| Q |
15 |
cagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatctccctttgcatctc |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| | ||| ||||||||| |||||||||||||||||||||| ||||||||||||| | |||||| |
|
|
| T |
43562752 |
cagactccatctattagttctcaccactctgagtccttacacataaataatgttgtcctaaatcccacacccatcaacattctatctccctctccatctc |
43562851 |
T |
|
| Q |
115 |
aaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||| ||||||||||||||| |
|
|
| T |
43562852 |
aaaatccctcac--gagtcatctgctagt |
43562878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 364
Target Start/End: Complemental strand, 14678321 - 14678091
Alignment:
| Q |
134 |
atctgctagttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagccc |
233 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14678321 |
atctactaattctgagtctcctcctcctgttcctcacagaattcatcctcaaaactgtcacacaatgagaaccagaggtaaacatggaattgtgcagccc |
14678222 |
T |
|
| Q |
234 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatata |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14678221 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatata |
14678122 |
T |
|
| Q |
334 |
atgctttacttaataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
14678121 |
atgctttacttcataatcagacatggtctct |
14678091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 143 - 364
Target Start/End: Original strand, 12507614 - 12507835
Alignment:
| Q |
143 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaac |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12507614 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaactctcacacaatgagaaccagaggtaaacatggaattgtgcagcccagaattaac |
12507713 |
T |
|
| Q |
243 |
cctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgctttac |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12507714 |
cctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatataatgctttac |
12507813 |
T |
|
| Q |
343 |
ttaataatcagacatggtctct |
364 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
12507814 |
ttcataatcagacatggtctct |
12507835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 143 - 364
Target Start/End: Original strand, 39590054 - 39590275
Alignment:
| Q |
143 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaac |
242 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39590054 |
ttctgagtctcctcctcctgttcctcatagaattcatcctcaaaaccgtcacacaatgaaaaccagaggtaaacatggaattgtgcagccaagaattaac |
39590153 |
T |
|
| Q |
243 |
cctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgctttac |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39590154 |
cctacactccttttgactcatgttgagcccactacttataaaactgctcttctggatcctaagtggcatttagcaatgcaagaagaatataatgctttac |
39590253 |
T |
|
| Q |
343 |
ttaataatcagacatggtctct |
364 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
39590254 |
ttcataatcagacatggtctct |
39590275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 12507448 - 12507590
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12507448 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
12507547 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12507548 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
12507590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 14678478 - 14678336
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14678478 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
14678379 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14678378 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
14678336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 39589888 - 39590030
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39589888 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacggaaataatgtggtcctaaatcccacacccatcaccattctatc |
39589987 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
39589988 |
tccctctgcatctcaaaatttctcacctgagtcatctgctagt |
39590030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 338
Target Start/End: Original strand, 2211305 - 2211390
Alignment:
| Q |
253 |
ttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgct |
338 |
Q |
| |
|
|||| ||||||||||| | |||| |||||||| |||||||||| ||||||| ||| ||| ||||| ||||||||||||||||| |
|
|
| T |
2211305 |
ttttaactcatgttgaactcacttcttacaaacatgctcttcaaaatcctaaatggcattatgcaatcgaagaagaatataatgct |
2211390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 364
Target Start/End: Complemental strand, 52606447 - 52606217
Alignment:
| Q |
134 |
atctgctagttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagccc |
233 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52606447 |
atctactaattctgagtctcctcctcctgttcctcacagaattcatcctcaaaactgtcacacaatgagaaccagaggtaaacatggaattgtgcagccc |
52606348 |
T |
|
| Q |
234 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatata |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52606347 |
agaattaaccctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatata |
52606248 |
T |
|
| Q |
334 |
atgctttacttaataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
52606247 |
atgctttacttcataatcagacatggtctct |
52606217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 146 - 364
Target Start/End: Original strand, 29889735 - 29889953
Alignment:
| Q |
146 |
tgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaaccct |
245 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29889735 |
tgagtctcctcctcatgttcctcacaaaattcatccttaaaaccgtcacacaatgagaaccagaggtaaacatggaattgtgcagcctagaattaaccct |
29889834 |
T |
|
| Q |
246 |
acactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgctttactta |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29889835 |
acactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatataatgctttacttc |
29889934 |
T |
|
| Q |
346 |
ataatcagacatggtctct |
364 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29889935 |
ataatcagacatggtctct |
29889953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 147 - 364
Target Start/End: Original strand, 52889075 - 52889291
Alignment:
| Q |
147 |
gagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaacccta |
246 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| | ||||||||||||| |
|
|
| T |
52889075 |
gagtctcctactcctgttcctcacagaattcatcctcaaaaccgttacacaatgagaaccagaggttaacatggaattgtgcagtctagaattaacccta |
52889174 |
T |
|
| Q |
247 |
cactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgctttacttaa |
346 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52889175 |
cactt-ttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatataatgctttacttca |
52889273 |
T |
|
| Q |
347 |
taatcagacatggtctct |
364 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
52889274 |
taattagacatggtctct |
52889291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 52606604 - 52606462
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52606604 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
52606505 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52606504 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
52606462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 29889566 - 29889708
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
29889566 |
tatcaaacacccatcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtagtcctaaatcccacacccatcaccattctatc |
29889665 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29889666 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
29889708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 52888905 - 52889047
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
52888905 |
tatcaaacacccctcagactccatctatcagttctcatcactctgagtcctcacacaaaaataatgttgtcctaaatcccacacccatcaccattctatc |
52889004 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52889005 |
cccctctgcatctcaaaattcctcacctgagtcatctgctagt |
52889047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1270 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold1270
Description:
Target: scaffold1270; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 143 - 364
Target Start/End: Complemental strand, 1439 - 1218
Alignment:
| Q |
143 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaac |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1439 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgagaaccagaggtaaacatggaattgtgcagcctagaattaac |
1340 |
T |
|
| Q |
243 |
cctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgctttac |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1339 |
cctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatataatgctttac |
1240 |
T |
|
| Q |
343 |
ttaataatcagacatggtctct |
364 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
1239 |
ttcttaatcagacatggtctct |
1218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1270; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 1603 - 1463
Alignment:
| Q |
3 |
tcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatctc |
102 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1603 |
tcaaacacccctcatactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatctc |
1504 |
T |
|
| Q |
103 |
cctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1503 |
cctctgcatctcaaaattcctcacctgagtcatctgctagt |
1463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1635 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold1635
Description:
Target: scaffold1635; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 143 - 364
Target Start/End: Original strand, 313 - 534
Alignment:
| Q |
143 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaac |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
313 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaacgagaaccagaggtaaacatggaattttgcagcctagaattaac |
412 |
T |
|
| Q |
243 |
cctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgctttac |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
413 |
cctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatataatgctttac |
512 |
T |
|
| Q |
343 |
ttaataatcagacatggtctct |
364 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
513 |
ttcataatcagacatggtctct |
534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1635; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 147 - 289
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
147 |
tatcaaacacccctcagactccatatattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
246 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
247 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 143 - 364
Target Start/End: Original strand, 44200789 - 44201010
Alignment:
| Q |
143 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaatcgtcacacaatgaaaaccagaggtaaacatggaattgtgcagcccagaattaac |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44200789 |
ttctgagtctcctcctcctgttcctcacagaattcatcctcaaaactctcacacaatgagaaccagaggtaaacatggaattgtgcagcccagaattaat |
44200888 |
T |
|
| Q |
243 |
cctacactccttttgactcatgttgagcccactacttacaaaaatgctcttcaggatcctaagtgggatttagcaatgcaagaagaatataatgctttac |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44200889 |
cctacactccttttgactcatgttgagcccactacttacaaaactgctcttcaggatcctaagtggcatttagcaatgcaagaagaatataatgctttac |
44200988 |
T |
|
| Q |
343 |
ttaataatcagacatggtctct |
364 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
44200989 |
ttcataatcagacatggtctct |
44201010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 44200623 - 44200765
Alignment:
| Q |
1 |
tatcaaacacgcctcagactccatctattagttctcatcactccgagtcctcaaacaaaaataatgtggtcctaaatcccacacccatcacgattctatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44200623 |
tatcaaacacccctcagactccatctattagttctcatcactccgagtcctcacacagaaataatgtggtcctaaatcccacacccatcaccattctatc |
44200722 |
T |
|
| Q |
101 |
tccctttgcatctcaaaattcctcacttgagtcatctgctagt |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44200723 |
tccctctgcatctcaaaattcctcacctgagtcatctgctagt |
44200765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4641 times since January 2019
Visitors: 4838