View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_low_22 (Length: 365)
Name: NF0727_low_22
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 29 - 270
Target Start/End: Complemental strand, 3436443 - 3436202
Alignment:
| Q |
29 |
aaaaatgactcccacatccccatgattatgatcacataatcattccaaactcaacagcctcgacatcaccgaacgagtacggcctagaggacaagaatca |
128 |
Q |
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| T |
3436443 |
aaaaatgactcccacatccccatgattatgatcacataatcattccaaactcaacagcctcgacatcaccgaacgagtacggcctagaggacaagaatca |
3436344 |
T |
|
| Q |
129 |
gtactcttactaagtgtcctcttcacaacattacgagtacatgtagccacaccatttgactggtcaccgatggtagttaagttaacagtaggagaaatgg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3436343 |
gtactcttactaagtgtcctcttcacaacattacgagtacatgtagccacaccatttgactggtcaccgatggtagttaagttaacagtaggagaaatcg |
3436244 |
T |
|
| Q |
229 |
aagtatccccaagatgattctcatcagtctttcctcccacac |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3436243 |
aagtatccccaagatgattctcatcagtctttcctcccacac |
3436202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 17963608 - 17963716
Alignment:
| Q |
30 |
aaaatgactcccacatccccatgattatgatcacataatcattccaaactcaacagcctcgacatcaccgaacgagtacggcctagaggacaagaatcag |
129 |
Q |
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||||||||||| ||||| |||||| ||||||| | || || |||||||| || || |||| ||||||||||||||| ||| ||||||| |||| || |
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| T |
17963608 |
aaaatgactcctgcatcctcatgatcatgatcatacaaccacaccaaactccacgaccctgacaccaccgaacgagtacgacctggaggacatgaattag |
17963707 |
T |
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| Q |
130 |
tactcttac |
138 |
Q |
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| ||||||| |
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| T |
17963708 |
tgctcttac |
17963716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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