View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_low_23 (Length: 338)
Name: NF0727_low_23
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 7353154 - 7353363
Alignment:
| Q |
8 |
cgaagaatatggtagaaaaatcaaacaatacatgtttcttgacgtcaatgagtgtagaaatcttttagcagnnnnnnnncaatgatttcagactagtctt |
107 |
Q |
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| T |
7353154 |
cgaaaaatatggtagaaaaatcaaacaatacatgtttcttgacgtcaatgagtgtagaaatcttttagcagtcttttttcaatgatttcagactagtctt |
7353253 |
T |
|
| Q |
108 |
tctagcggtcgttcggggtattttgannnnnnn--ggctgccggagagtaatatcggaagcctaaagaatagttttcttgtcatgaaagcttggtctaca |
205 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7353254 |
tctagcggtcgttcggggtattttgatttttttttggctgccggagagtaatatcggaagcctaaagaatagttttcttgtcatgaaagcttggtctaca |
7353353 |
T |
|
| Q |
206 |
tgaacaactc |
215 |
Q |
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||||| |||| |
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| T |
7353354 |
tgaacgactc |
7353363 |
T |
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