View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0727_low_25 (Length: 334)
Name: NF0727_low_25
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 29 - 322
Target Start/End: Complemental strand, 3951412 - 3951116
Alignment:
| Q |
29 |
agttttcaagtcccaattcttgactttaaggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcata |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3951412 |
agttttcaagtcccaattcttgactttaaggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcata |
3951313 |
T |
|
| Q |
129 |
aaagtgtgcaggacattgtatatatggaag---gtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaactgaaaacta |
225 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3951312 |
aaagtgtgcaggacattatatatatggaagaaggtcacaaaaaagtttttgtcttactttaaagctctaacaatatctacaaatatagaactgaaaacta |
3951213 |
T |
|
| Q |
226 |
taattacatactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatatt |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3951212 |
taattacatactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatatt |
3951116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 4027464 - 4027646
Alignment:
| Q |
31 |
ttttcaagtcccaattcttgactttaaggaacaaaatga--gtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcata |
128 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| |||| ||||||| |||||| | ||| | |||||| |||||||||| | ||||| |||| |
|
|
| T |
4027464 |
ttttcaagtcccaattcttgacattaaggaccaaaatgatagtttgctctaatatctgcaaattaa-tatttagttctattatacaatgatttctacata |
4027562 |
T |
|
| Q |
129 |
aaagtgtgcaggacattgtatatatggaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatataga |
214 |
Q |
| |
|
| ||||||||||||| | ||||| ||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
4027563 |
a--gtgtgcaggacatagaatataaggaaggtcacaaaaaggttttggtcttacttcacagctcatacaatatctacaaatataga |
4027646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 4013305 - 4013367
Alignment:
| Q |
155 |
gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact |
217 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
4013305 |
gaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatatagaact |
4013367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 4215801 - 4215843
Alignment:
| Q |
280 |
cacaaatttgaaattgataagcagagtatttacagcatatatt |
322 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
4215801 |
cacaaattagaaattgataatcagagtatttacagcagatatt |
4215843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 4005234 - 4005294
Alignment:
| Q |
262 |
tcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatatta |
323 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| || |||| ||||| | ||||||||||||||| |
|
|
| T |
4005234 |
tcagcattaattcataac-acaaattcgaatttaataaacagagcaattacagcatatatta |
4005294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 13400438 - 13400477
Alignment:
| Q |
283 |
aaatttgaaattgataagcagagtatttacagcatatatt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13400438 |
aaatttgaaattgataagcagagtatttacagcatatatt |
13400477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3057 times since January 2019
Visitors: 4805