View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0727_low_30 (Length: 315)
Name: NF0727_low_30
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_30 |
 | |
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| [»] scaffold0339 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 23001529 - 23001798
Alignment:
| Q |
16 |
atcaacaagaatcattgagaaggccacaacttcctctagtagagcatcaaagtga-ccccctaagaaacggggcaaaaagtcagcaggttatttaaaagc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23001529 |
atcaacaagaatcattgagaaggccacaacttcctctagtagagcatcaaagtgagccccctaagaaacggggcaaaaagtcagcaggttatttaaaagc |
23001628 |
T |
|
| Q |
115 |
atcaaaagggaagattgataacatggagctgaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggagatgaagaaaa |
214 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23001629 |
atcaaaacggaagattgatgacatggacctgaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggagatgaagaaaa |
23001728 |
T |
|
| Q |
215 |
gatggtggaatagagattggaagattggtcaaagctcgaaataaggaatagaataaactcttagcttctg |
284 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||| ||||||| |
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|
| T |
23001729 |
gatggtggaatagagattggaagattgattaaagctccaaacaaggaatagaataaactcttggcttctg |
23001798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 23786861 - 23786592
Alignment:
| Q |
16 |
atcaacaagaatcattgagaaggccacaacttcctctagtagagcatcaaagtga-ccccctaagaaacggggcaaaaagtcagcaggttatttaaaagc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23786861 |
atcaacaagaatcattgagaaggccacaacttcctctagtagagcatcaaagtgagccccctaagaaacggggcaaaaagtcagcaggttatttaaaagc |
23786762 |
T |
|
| Q |
115 |
atcaaaagggaagattgataacatggagctgaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggagatgaagaaaa |
214 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23786761 |
atcaaaacggaagattgatgacatggacctgaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggagatgaagaaaa |
23786662 |
T |
|
| Q |
215 |
gatggtggaatagagattggaagattggtcaaagctcgaaataaggaatagaataaactcttagcttctg |
284 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||| ||||||| |
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|
| T |
23786661 |
gatggtggaatagagattggaagattgattaaagctccaaacaaggaatagaataaactcttggcttctg |
23786592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 18156038 - 18155765
Alignment:
| Q |
16 |
atcaacaagaatcattgagaaggcca---caacttcctctagtagagcatcaaagtga-ccccctaagaaacggggcaaaaagtcagcaggttatttaaa |
111 |
Q |
| |
|
|||||||||||||||||| ||||||| || || ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
18156038 |
atcaacaagaatcattgacaaggccaaggcagct-cctctagtagagcatcaaagtgagccccctaagaaacagggcaaaaagtcagcaacttatttaaa |
18155940 |
T |
|
| Q |
112 |
agc--atcaaaagggaagattgataacatggagctgaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggagatgaa |
209 |
Q |
| |
|
||| ||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
18155939 |
agcgcatcaaaacggaagattgatgacaaggagttgaagggtctgaagttgtccagactaaagatgaagaaaaggttggaaaaccagcaaaggagatgaa |
18155840 |
T |
|
| Q |
210 |
gaaaagatggtggaatagagattggaagattggtcaaagctcgaaataaggaatagaataaactcttagcttctg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||| |
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|
| T |
18155839 |
gaaaagatggtggaatagagattggaagcttggtcaaagctccaaataatgaatagaataaactcttggcttctg |
18155765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 18155317 - 18155590
Alignment:
| Q |
16 |
atcaacaagaatcattgagaaggcca---caacttcctctagtagagcatcaaagtga-ccccctaagaaacggggcaaaaagtcagcaggttatttaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||| || || | ||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||| |
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|
| T |
18155317 |
atcaacaagaatcattgagaaggccaaggcagctgc-tctagtagagcatcaaagtgagccccctaagaaacaacgcaaaaagtcatcagcttatttaaa |
18155415 |
T |
|
| Q |
112 |
agc--atcaaaagggaagattgataacatggagctgaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggagatgaa |
209 |
Q |
| |
|
||| ||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
18155416 |
agcgcatcaaaacggaagattgatgacaaggagttgaagggtctgaagttgtccagactaaagatgaagaaaaggttggaaaaccagcaaaggagatgaa |
18155515 |
T |
|
| Q |
210 |
gaaaagatggtggaatagagattggaagattggtcaaagctcgaaataaggaatagaataaactcttagcttctg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||| |
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|
| T |
18155516 |
gaaaagatggtggaatagagattggaagcttggtcaaagctccaaataatgaatagaataaactcttggcttctg |
18155590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 23002246 - 23001973
Alignment:
| Q |
16 |
atcaacaagaatcattgagaaggcca---caacttcctctagtagagcatcaaagtga-ccccctaagaaacggggcaaaaagtcagcaggttatttaaa |
111 |
Q |
| |
|
|||| ||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
23002246 |
atcagcaagaatcattgagaaggccaaggcagct-cctctagtagagcatcaaagtgagccccctaagaaatggggcaaaaagtcagcaacgtatttaaa |
23002148 |
T |
|
| Q |
112 |
agcatcaaaagggaagattgataacatggagctgaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggagatgaaga |
211 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
23002147 |
agcatcaaaacggaagattgatgacaaggagttgaagggtctgaagttgtccagactaaagatgaagaaaagattggaaaaccagcataggagatgaaga |
23002048 |
T |
|
| Q |
212 |
aaagatggtggaatagagattggaagattggtcaaagctcgaa--ataaggaatagaataaactcttagcttctg |
284 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| || |||| ||||||||||||||||| ||||||| |
|
|
| T |
23002047 |
aaagatggtggaatagagatcggaagattggtcaatgctccaaatataatgaatagaataaactcttggcttctg |
23001973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 23786144 - 23786417
Alignment:
| Q |
16 |
atcaacaagaatcattgagaaggcca---caacttcctctagtagagcatcaaagtga-ccccctaagaaacggggcaaaaagtcagcaggttatttaaa |
111 |
Q |
| |
|
|||| ||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
23786144 |
atcagcaagaatcattgagaaggccaaggcagct-cctctagtagagcatcaaagtgagccccctaagaaatggggcaaaaagtcagcaacgtatttaaa |
23786242 |
T |
|
| Q |
112 |
agcatcaaaagggaagattgataacatggagctgaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggagatgaaga |
211 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
23786243 |
agcatcaaaacggaagattgatgacaaggagttgaagggtctgaagttgtccagactaaagatgaagaaaagattggaaaaccagcataggagatgaaga |
23786342 |
T |
|
| Q |
212 |
aaagatggtggaatagagattggaagattggtcaaagctcgaa--ataaggaatagaataaactcttagcttctg |
284 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| || |||| ||||||||||||||||| ||||||| |
|
|
| T |
23786343 |
aaagatggtggaatagagatcggaagattggtcaatgctccaaatataatgaatagaataaactcttggcttctg |
23786417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 47 - 251
Target Start/End: Complemental strand, 21085046 - 21084840
Alignment:
| Q |
47 |
tcctctagtagagcatcaaagtga-ccccctaagaaacggggcaaaaagtcagcaggttatttaaaagcatcaaaagggaagattgataacatgg-agct |
144 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| | |||| |
|
|
| T |
21085046 |
tcctctagtggagcatgaaagtgaaccccctaagaaacggggcaaaaagtcagcatcaaatttaaaagcatcaaaaggaaagattgatgacaaagcagct |
21084947 |
T |
|
| Q |
145 |
gaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggagatgaagaaaagatggtggaatagagattggaagattggtc |
244 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||| |||||||||| || |
|
|
| T |
21084946 |
gaggggtctgaagttgtccagactaatgatgaagaaaggattcgaaaaccggcaaaggagacgaagaaaagatggtggaataaagagtggaagattgatc |
21084847 |
T |
|
| Q |
245 |
aaagctc |
251 |
Q |
| |
|
||||||| |
|
|
| T |
21084846 |
aaagctc |
21084840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 47 - 251
Target Start/End: Complemental strand, 21039995 - 21039789
Alignment:
| Q |
47 |
tcctctagtagagcatcaaagtga-ccccctaagaaacggggcaaaaagtcagcaggttatttaaaagcatcaaaagggaagattgataacatgg-agct |
144 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| | |||| |
|
|
| T |
21039995 |
tcctctagtggagcatgaaagtgaaccccctaagaaacggggcaaaaagtcagcatcaaatttaaaagcatcaaaaggaaagattgatgacaaagcagct |
21039896 |
T |
|
| Q |
145 |
gaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggagatgaagaaaagatggtggaatagagattggaagattggtc |
244 |
Q |
| |
|
|| ||||||||||||||||||| || |||||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
21039895 |
gaggggtctgaagttgtccagaaaaatgatgaagaaaggattcgaaaaccggcaaaggagacgaagaaaagatggtggaataaagagtggaagattggtc |
21039796 |
T |
|
| Q |
245 |
aaagctc |
251 |
Q |
| |
|
||||||| |
|
|
| T |
21039795 |
aaagctc |
21039789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 21063086 - 21062999
Alignment:
| Q |
47 |
tcctctagtagagcatcaaagtga-ccccctaagaaacggggcaaaaagtcagcaggttatttaaaagcatcaaaagggaagattgat |
133 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
21063086 |
tcctctagtggagcatgaaagtgaaccccctaagaaacggggcaaaaagtcagcatcagatttaaaagcatctaaagggaagattgat |
21062999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 655 - 750
Alignment:
| Q |
111 |
aagcatcaaaagggaagattgataacat-ggagctgaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggaga |
205 |
Q |
| |
|
|||||||||||| ||| |||||| ||| |||||||| ||||||| |||||| |||| ||| ||||||||||||| | || | |||||| |||||| |
|
|
| T |
655 |
aagcatcaaaagagaatattgatgacaaaggagctgaggggtctggagttgttcagaataaggatgaagaaaagactggacagccagcagaggaga |
750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 9101 - 9006
Alignment:
| Q |
111 |
aagcatcaaaagggaagattgataacat-ggagctgaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggaga |
205 |
Q |
| |
|
|||||||||||| ||| |||||| ||| |||||||| ||||||| |||||| |||| ||| ||||||||||||| | || | |||||| |||||| |
|
|
| T |
9101 |
aagcatcaaaagagaatattgatgacaaaggagctgaggggtctggagttgttcagaataaggatgaagaaaagactggacagccagcagaggaga |
9006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 47271430 - 47271525
Alignment:
| Q |
111 |
aagcatcaaaagggaagattgataacat-ggagctgaagggtctgaagttgtccagactaaagatgaagaaaagattcgaaaaccagcaaaggaga |
205 |
Q |
| |
|
|||||||||||| ||| |||||| ||| |||||||| ||||||| |||||| |||| ||| ||||||||||||| | || | |||||| |||||| |
|
|
| T |
47271430 |
aagcatcaaaagagaatattgatgacaaaggagctgaggggtctggagttgttcagaataaggatgaagaaaagactggacagccagcagaggaga |
47271525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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