View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0727_low_31 (Length: 311)

Name: NF0727_low_31
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0727_low_31
NF0727_low_31
[»] chr1 (3 HSPs)
chr1 (12-282)||(8051683-8051952)
chr1 (12-268)||(16273973-16274228)
chr1 (232-282)||(43915673-43915723)
[»] chr3 (1 HSPs)
chr3 (12-282)||(37087697-37087967)
[»] chr8 (1 HSPs)
chr8 (12-282)||(45020832-45021101)
[»] chr2 (3 HSPs)
chr2 (12-282)||(33075792-33076062)
chr2 (12-282)||(27848927-27849185)
chr2 (12-70)||(44702520-44702578)
[»] chr7 (1 HSPs)
chr7 (12-275)||(42337682-42337944)
[»] chr6 (2 HSPs)
chr6 (80-275)||(15977226-15977421)
chr6 (178-232)||(26286020-26286074)
[»] chr4 (1 HSPs)
chr4 (12-282)||(56112953-56113208)
[»] scaffold0446 (2 HSPs)
scaffold0446 (12-201)||(11819-12008)
scaffold0446 (214-254)||(12007-12047)
[»] chr5 (2 HSPs)
chr5 (203-282)||(4533722-4533801)
chr5 (12-68)||(4533804-4533860)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 8051952 - 8051683
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||         |||||||||||||||| ||||| |||||||||    
T  8051952 atgaacataacaccattgttgtttcttttgtccataatgttggaaaaaaggcattttgcaaaaaaaa-ttctcccaattctttcttcctcttccttcttt 8051854  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagaagcaatccatgaaaaaagatagcagttcatcatcggcaactgtcataagaagtgtag 211  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  8051853 cctaaccaagacttgcaaattattaaaatcatcaacactgagaagcaatccatgaaaaaaggtagtagttcatcatcggcaactgtcataagaagtgtag 8051754  T
Q  212 cttatggaaaacaaactgaaaacaatagatttaaattccggcgtggtggtgatgttttccggtgcagtggt 282  Q
    ||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  8051753 cttctggaaaacaaactgaaaacaatagatttaaattccggcgcggtggtgaagttttccggtgcagtggt 8051683  T

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Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 16273973 - 16274228
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||||||         |||||||||||||||| ||||| |||||||||    
T  16273973 atgaacataacaccattgttgtttcttttgtccataatgctagaaagaatgcattttgcaaaaaaaa-ttctcccaattctttcttcctcttccttcttt 16274071  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagaagcaatccatgaaaaaagatagcagttcatcatcggcaactgtcataagaagtgtag 211  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  16274072 cctaaccaagacttgcaaattattaaaattatcaacactgagaagcaatctatggaaaaaggtagcagttcatcatcggcaactgtcataagaagtgtag 16274171  T
Q  212 cttatggaaaacaaactgaaaacaatagatttaaattccggcgtggtggtgatgttt 268  Q
    ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  16274172 cttctggaaaacaaactgaaaacaatatatttaaattccggcgcggtggtgatgttt 16274228  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 43915673 - 43915723
Alignment:
Q  232 aacaatagatttaaattccggcgtggtggtgatgttttccggtgcagtggt 282  Q
    ||||||||||  ||||||||||  ||||||||||||||||||||| |||||    
T  43915673 aacaatagatagaaattccggcacggtggtgatgttttccggtgcggtggt 43915723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 37087967 - 37087697
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||          ||| ||||||||||| ||||| |||||||||    
T  37087967 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgcattttgcaaaaaaaaaatcttccaattctttcttcctcttccttcttt 37087868  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagaagcaatccatgaaaaaagatagcagttcatcatcggcaactgtcataagaagtgtag 211  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  37087867 cctaaccaagacttgcaaattattaaaattatcaacactgagaagcaatccatggaaaaaggtagcagttcatcatcggcaactgtcataagaagtgtag 37087768  T
Q  212 cttatggaaaacaaactgaaaacaatagatttaaattccggcgtggtggtgatgttttccggtgcagtggt 282  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37087767 cttctggaaaacaaactgaaaacaatagatttaaattccggcgtggtggtgatgttttccggtgcggtggt 37087697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 45020832 - 45021101
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||         | |||||||||||||| ||||| |||||||||    
T  45020832 atgaacataacatcattgttgtttcttttgtccataatgctggaaagaatgcattttgcaaaaaaaaat-ctcccaattctttcttcctcttccttcttt 45020930  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagaagcaatccatgaaaaaagatagcagttcatcatcggcaactgtcataagaagtgtag 211  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||     
T  45020931 cctaaccaagacttgcaaattattaaaattatcaacactgagaagcaatccatggaaaaaggtagcagttcatcatcggcaactgtcacaagaagtgtaa 45021030  T
Q  212 cttatggaaaacaaactgaaaacaatagatttaaattccggcgtggtggtgatgttttccggtgcagtggt 282  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  45021031 cttctggaaaacaaactgaaaacaatagatttaaattccggcgcggtggggatgttttccggtgcggtggt 45021101  T

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Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 33076062 - 33075792
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||         |||||||||||||||| ||||| |||||||||    
T  33076062 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgcattttgcaaaaaaaaattctcccaattctttcttcctcttccttcttt 33075963  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagaagcaatccatgaaaaaagatagcagttcatcatcggcaactgtcataagaagtgtag 211  Q
     |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||     
T  33075962 gctaaccaagacttgcaaattattaaaattatcaacactgagaagcaatccatggaaaaacgtagcagttcatcatcggcaactgtcataagaagtgtaa 33075863  T
Q  212 cttatggaaaacaaactgaaaacaatagatttaaattccggcgtggtggtgatgttttccggtgcagtggt 282  Q
    ||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||    
T  33075862 cttctgaaaaacaaactgaaaacaatagatttcaattccggcgcggtggtgatgtttaccggtgcggtggt 33075792  T

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Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 27849185 - 27848927
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||          |||||||||||||||| ||||| |||||||||    
T  27849185 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgcattttg-taaaaaaaattctcccaattctttcttcctcttccttcttt 27849087  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagaagcaatccatgaaaaaagatagcagttcatcatcggcaactgtcataagaagtgtag 211  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||    
T  27849086 cctaaccaagacttgcaaattattaaaattatcaacactgagaagcaatccatggaaaaaggtagcagttcatcatcggcaactgtcataagaagcgtag 27848987  T
Q  212 cttatggaaaacaaactgaaaacaatagatttaaattccggcgtggtggtgatgttttccggtgcagtggt 282  Q
    ||| ||           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  27848986 cttctg-----------gaaaacaatagatttaaattccggcgcggtggtgatgttttccggtgcggtggt 27848927  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 44702520 - 44702578
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgc 70  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  44702520 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgcattttgc 44702578  T

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Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 42337944 - 42337682
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||         |||||||| ||||||| ||||| |||||||||    
T  42337944 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgcattttgcaaaacaaa-ttctcccacttctttcttcctcttccttcttt 42337846  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagaagcaatccatgaaaaaagatagcagttcatcatcggcaactgtcataagaagtgtag 211  Q
    ||||||||| ||||||||||||||||||| | ||||| |||| |||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||    
T  42337845 cctaaccaaaacttgcaaattattaaaattatcaacattgaggagcaatccatgaaaaaatgtagcagttcatcatcggcaactgtcataagaagcgtag 42337746  T
Q  212 cttatggaaaacaaactgaaaacaatagatttaaattccggcgtggtggtgatgttttccggtg 275  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42337745 cttctggaaaacaaactgaaaacaatagatttaaattccggcgcggtggtgatgttttccggtg 42337682  T

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Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 80 - 275
Target Start/End: Complemental strand, 15977421 - 15977226
Alignment:
Q  80 ttctcccaattctttcatcctcatccttctttcctaaccaagacttgcaaattattaaaatcaccaacactgagaagcaatccatgaaaaaagatagcag 179  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||  ||||||    
T  15977421 ttctcccacttctttcttcctcttccttctttcctaaccaagacttgcaaattattaaaattatcaacattgaggagcaatccatgaaaaaatgtagcag 15977322  T
Q  180 ttcatcatcggcaactgtcataagaagtgtagcttatggaaaacaaactgaaaacaatagatttaaattccggcgtggtggtgatgttttccggtg 275  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15977321 ttcatcatcggcaactgtcataagaagcgtagcttctggaaaacaaactgaaaacaatagatttaaattccggcgcggtggtgatgttttccggtg 15977226  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 26286020 - 26286074
Alignment:
Q  178 agttcatcatcggcaactgtcataagaagtgtagcttatggaaaacaaactgaaa 232  Q
    ||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||    
T  26286020 agttcatcaccagcaactgtcattagaagtgtagcttctggaaaacaaactgaaa 26286074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 56112953 - 56113208
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||         | |||||||||||||| ||||| |||||||||    
T  56112953 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgtattttgcaaaaaaaaat-ctcccaattctttcttcctcttccttcttt 56113051  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagaagcaatccatgaaaaaagatagcagttcatcatcggcaactgtcataagaagtgtag 211  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||||||||||  |||||| ||||||||||||||| ||||||||||                
T  56113052 cctaaccaagacttgcaaattattaaaattatcaacattgagaagcaatccattgaaaaaggtagcagttcatcatcagcaactgtca------------ 56113139  T
Q  212 cttatggaaaacaaactgaaaacaatagatttaaattccggcgtggtggtgatgttttccggtgcagtggt 282  Q
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  56113140 --tatggaaaacaaactgaaaacaatagatttaaattacggcgcggtggtgatgttttccggtgcggtggt 56113208  T

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Target: scaffold0446 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 11819 - 12008
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||         | |||||||||||||| ||||| |||||||||    
T  11819 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgtattttgcaaaaaaaaat-ctcccaattctttcttcctcttccttcttt 11917  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagaagcaatccatgaaaaaagatagcagttcatca-tcggcaactgtcata 201  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||||||||||  || ||| ||||||||||||| || ||||||||||||    
T  11918 cctaaccaagacttgcaaattattaaaattatcaacattgagaagcaatccattgaacaaggtagcagttcatcattccgcaactgtcata 12008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 12007 - 12047
Alignment:
Q  214 tatggaaaacaaactgaaaacaatagatttaaattccggcg 254  Q
    |||||||||||||||||||||||||||| ||| || |||||    
T  12007 tatggaaaacaaactgaaaacaatagatctaattttcggcg 12047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 4533801 - 4533722
Alignment:
Q  203 gaagtgtagcttatggaaaacaaactgaaaacaatagatttaaattccggcgtggtggtgatgttttccggtgcagtggt 282  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  4533801 gaagtgtagcttctagaaaacaaactgaaaacaatagatttaaattccggcgcggtggtgatgttttccggtgcggtggt 4533722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 4533860 - 4533804
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcatttt 68  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||||||    
T  4533860 atgaacataacaccattgttgtttcctttgtccataatgctggaaagaatgcatttt 4533804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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