View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0727_low_37 (Length: 286)
Name: NF0727_low_37
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_37 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 41 - 286
Target Start/End: Complemental strand, 33750683 - 33750438
Alignment:
| Q |
41 |
ttctcgttctcattctcatcttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaaccattggaaaattgagtttggccc |
140 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33750683 |
ttctcattctcattctcatcttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaaccattggaaaattgagtttggccc |
33750584 |
T |
|
| Q |
141 |
tcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33750583 |
tcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtc |
33750484 |
T |
|
| Q |
241 |
acgaatttcagcagcccatttaccccatggtctttgtctcactcct |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33750483 |
acgaatttcagcagcccatttaccccatggtctttgtctcactcct |
33750438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 98 - 286
Target Start/End: Complemental strand, 33719153 - 33718965
Alignment:
| Q |
98 |
tgcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccg |
197 |
Q |
| |
|
|||||||| || |||||||| | |||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33719153 |
tgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagctctggcagcttcctccgccg |
33719054 |
T |
|
| Q |
198 |
tggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcct |
286 |
Q |
| |
|
||| ||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
33719053 |
tggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgtctcactcct |
33718965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 100 - 286
Target Start/End: Complemental strand, 33735824 - 33735638
Alignment:
| Q |
100 |
cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtg |
199 |
Q |
| |
|
|||||| || |||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33735824 |
cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg |
33735725 |
T |
|
| Q |
200 |
gaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcct |
286 |
Q |
| |
|
| ||| ||||| |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||||| |
|
|
| T |
33735724 |
gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcct |
33735638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 99 - 286
Target Start/End: Complemental strand, 33721171 - 33720984
Alignment:
| Q |
99 |
gcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgt |
198 |
Q |
| |
|
||||||| || |||||||| | ||||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
33721171 |
gcttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgt |
33721072 |
T |
|
| Q |
199 |
ggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcct |
286 |
Q |
| |
|
|| ||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
33721071 |
ggtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcct |
33720984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 33750700 - 33750671
Alignment:
| Q |
30 |
cttgattcatattctcgttctcattctcat |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33750700 |
cttgattcatattctcgttctcattctcat |
33750671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 6583102 - 6583052
Alignment:
| Q |
236 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcct |
286 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
6583102 |
gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcct |
6583052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 6568943 - 6568893
Alignment:
| Q |
236 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcct |
286 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
6568943 |
gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcct |
6568893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 13409921 - 13409880
Alignment:
| Q |
245 |
atttcagcagcccatttaccccatggtctttgtctcactcct |
286 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
13409921 |
atttctgctgcccattttccccatggtctttgtctcactcct |
13409880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3032 times since January 2019
Visitors: 4805