View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_low_38 (Length: 285)
Name: NF0727_low_38
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 57 - 236
Target Start/End: Complemental strand, 29976441 - 29976261
Alignment:
| Q |
57 |
catcatcatcttcaatttttt-attatcatcatcctcatttagtttcttcatcacactaaattccaagaatcttttttcttctttcatgtaccaataaat |
155 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29976441 |
catcatcatcttcaatttttttattatcatcatcctcatttagtttcttcatcacactaaattccaagaatcttttttcttctttcatgtaccaataaat |
29976342 |
T |
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| Q |
156 |
ctactcaaacccatccaacattttttctgctcaaccccattttaacaaatgcctcatgcatctagtataagcctcttgttt |
236 |
Q |
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| T |
29976341 |
ctacttaaacccatccaacattttttctgctcaaacccattttaacaaatacctcatgcatttagtgtaagcctcttgttt |
29976261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 38280131 - 38280052
Alignment:
| Q |
157 |
tactcaaacccatccaacattttttctgctcaaccccattttaacaaatgcctcatgcatctagtataagcctcttgttt |
236 |
Q |
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| T |
38280131 |
tactcaaacccatccaacattttttctgctcaaacccattttaacaaatacctcatgcatctagtgtaagcctcttgttt |
38280052 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 38280169 - 38280131
Alignment:
| Q |
57 |
catcatcatcttcaattttttattatcatcatcctcatt |
95 |
Q |
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| T |
38280169 |
catcatcatcttcaattttttatcatcatcatcctcatt |
38280131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 48619687 - 48619766
Alignment:
| Q |
157 |
tactcaaacccatccaacattttttctgctcaaccccattttaacaaatgcctcatgcatctagtataagcctcttgttt |
236 |
Q |
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| T |
48619687 |
tactcaaacccatccaacattttttctgctcaaacccattttaacaaatacctcatgcatctagtgtaagcctcttgttt |
48619766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 1184847 - 1184754
Alignment:
| Q |
75 |
tttattatcatcatcctcatttagtttcttcatcacactaaattccaagaatcttttttcttc----tttcatgtaccaataaatctactcaaa |
164 |
Q |
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||||| |||||| || | |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1184847 |
tttatcatcatcttctttatttagtttcttcatcacactaaattccaataatcttttttcttcttaatttcatgtaccaataaatctactcaaa |
1184754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 48619649 - 48619687
Alignment:
| Q |
57 |
catcatcatcttcaattttttattatcatcatcctcatt |
95 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
48619649 |
catcatcatcttcaattttttatcatcatcatcctcatt |
48619687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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