View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_low_42 (Length: 257)
Name: NF0727_low_42
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 4903881 - 4903995
Alignment:
| Q |
2 |
tgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattg |
101 |
Q |
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| T |
4903881 |
tgttggaatctgttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggattg |
4903980 |
T |
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| Q |
102 |
tttgttgcggtgatg |
116 |
Q |
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| T |
4903981 |
tttgttgcggtgatg |
4903995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 4904079 - 4904132
Alignment:
| Q |
130 |
tgctggttttcggttctggtgtaggcagttagcttctaagctgcttctttagga |
183 |
Q |
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| T |
4904079 |
tgctggttttcggttctggtgtaggcagttagcttctaagctgcttctttagga |
4904132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 1557359 - 1557465
Alignment:
| Q |
4 |
ttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtt |
103 |
Q |
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| T |
1557359 |
ttggaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgtc |
1557458 |
T |
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| Q |
104 |
tgttgcg |
110 |
Q |
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| T |
1557459 |
tgttgcg |
1557465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 22153676 - 22153562
Alignment:
| Q |
2 |
tgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattg |
101 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22153676 |
tgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttg |
22153577 |
T |
|
| Q |
102 |
tttgttgcggtgatg |
116 |
Q |
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| T |
22153576 |
tttgttgcggtgatg |
22153562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 22209591 - 22209477
Alignment:
| Q |
2 |
tgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattg |
101 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22209591 |
tgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttg |
22209492 |
T |
|
| Q |
102 |
tttgttgcggtgatg |
116 |
Q |
| |
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| T |
22209491 |
tttgttgcggtgatg |
22209477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 38185318 - 38185266
Alignment:
| Q |
64 |
tgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatg |
116 |
Q |
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| T |
38185318 |
tgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcggtgatg |
38185266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 43073787 - 43073753
Alignment:
| Q |
14 |
ttaaggtgttgtcttggaggtggtttttgggtagg |
48 |
Q |
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| T |
43073787 |
ttaaggtgttgtcttggaggtggttgttgggtagg |
43073753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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