View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_low_44 (Length: 252)
Name: NF0727_low_44
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 25785493 - 25785643
Alignment:
| Q |
30 |
actactacccactaaaataattatagtaagcatttaaaacacaatctataaaatagatagtgacatacatgctttacatctatcatgtcactagctctaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25785493 |
actactacccactaaaataattatagtaagcatttaaaacacaatctataaaatagatagtgacatacatgctttacatctatcatgtcactagctctaa |
25785592 |
T |
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| Q |
130 |
ctaaaacaggtaaaaagggttccatatagcatttaattttctaactaataa |
180 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25785593 |
ctaaaacaagtaaaaagggttccatatagcatttaattttctaactaataa |
25785643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 25789213 - 25789061
Alignment:
| Q |
30 |
actactacccactaaaataattatagtaagcatttaaaac--acaatctataaaatagatagtgacatacatgctttacatctatcatgtcactagctct |
127 |
Q |
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||||||| |||| ||||| |||| |||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |
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| T |
25789213 |
actactaaccaccaaaattattacagtaagcatttaaaactcacaatctataaaatagataatgacatatatgtcttacatctatcatgtcactagctct |
25789114 |
T |
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| Q |
128 |
aactaaaacaggtaa-aaagggttccatatagcatttaattttctaactaata |
179 |
Q |
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|||||||||| | || ||| ||||| ||||| |||||||||||||| |||| |
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| T |
25789113 |
aactaaaacaagaaataaaaggttcttgatagcctttaattttctaaccaata |
25789061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 41367569 - 41367628
Alignment:
| Q |
176 |
aataatgtttgttgttggtaataatcgatg----taaaaagctttattgaatgttgttgg |
231 |
Q |
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| T |
41367569 |
aataatgtttgttgttggtaataatcgatgtaattaaaaagctttattgaatgttgttgg |
41367628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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