View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0727_low_46 (Length: 250)

Name: NF0727_low_46
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0727_low_46
NF0727_low_46
[»] chr2 (6 HSPs)
chr2 (1-240)||(19377611-19377841)
chr2 (1-158)||(36204767-36204925)
chr2 (1-158)||(18746628-18746783)
chr2 (20-158)||(19899446-19899584)
chr2 (168-240)||(18746845-18746917)
chr2 (168-240)||(36204632-36204704)
[»] chr8 (2 HSPs)
chr8 (26-158)||(27286458-27286589)
chr8 (168-240)||(27286651-27286723)
[»] chr6 (2 HSPs)
chr6 (6-158)||(8839709-8839860)
chr6 (168-240)||(8839575-8839647)
[»] chr5 (1 HSPs)
chr5 (1-99)||(1290261-1290359)
[»] chr3 (2 HSPs)
chr3 (1-163)||(9120629-9120790)
chr3 (168-240)||(9120835-9120907)
[»] chr4 (2 HSPs)
chr4 (25-154)||(24521845-24521973)
chr4 (168-240)||(24522039-24522111)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 19377611 - 19377841
Alignment:
Q  1 ttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19377611 ttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttctgatcggcggaccctctgttc 19377710  T
Q  101 gttgtggcctgttttctgttggtgtcgaaaccccaaacaggggtagtcctcacaaccgccggtttcattggtttcatgattctgatctttgaaggtgtgt 200  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||         |||||||||||||||||||||||||||||||    
T  19377711 gttatggcctgttttctgttggtgtcgaaaacccaaacaggggtagtcctcacaactgcc---------ggtttcatgattctgatctttgaaggtgtgt 19377801  T
Q  201 tatcgattcgaggtaggcgttttgatgttttgactctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19377802 tatcgattcgaggtaggcgttttgatgttttgactctctg 19377841  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 36204925 - 36204767
Alignment:
Q  1 ttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgttc 100  Q
    ||||||||||||| | || |||| ||||||||||||||||||| |||||||| ||||||||||||| || |||||||| |||||| ||||| || |||||    
T  36204925 ttttcatcttttctggcggtctggcatatgggtttctataacgtgttggtgtttggttcgaccaccgtcgcgtctgttctgatcgacggacactgtgttc 36204826  T
Q  101 gttgtggcctgttttctgttggtgtcgaaaccccaaaca-ggggtagtcctcacaaccg 158  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  36204825 gttgtggcctgttttctattggtgtcgaaaacccaaacagggggtagtcctcacaaccg 36204767  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 18746628 - 18746783
Alignment:
Q  1 ttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgttc 100  Q
    |||||||||||| || || |||||||||||||||||||||| | |||||||| |   ||||||||||||  || || | |||||||||||| ||||||||    
T  18746628 ttttcatctttttcgacgatctgacatatgggtttctataatgcgttggtgtcta--tcgaccaccatcgtgtttgctctgatcggcggacactctgttc 18746725  T
Q  101 gttgtggcctgttttctgttggtgtcgaaaccccaaacaggggtagtcctcacaaccg 158  Q
    || ||||||||||||  ||| ||||||||| |||||||||||||||||||||||||||    
T  18746726 gtcgtggcctgtttttcgtttgtgtcgaaaacccaaacaggggtagtcctcacaaccg 18746783  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 19899446 - 19899584
Alignment:
Q  20 tctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgttcgttgtggcctgttttctgt 119  Q
    |||| |||||| |||  ||||||| ||||||||||||||||| ||||||| ||| |||| ||||||| |||| || ||||||| ||||||||||||||||    
T  19899446 tctggcatatgagttcgtataacgcgttggtgtgtggttcgatcaccatcgcgtgtgttctgatcggtggacactttgttcgtcgtggcctgttttctgt 19899545  T
Q  120 tggtgtcgaaaccccaaacaggggtagtcctcacaaccg 158  Q
    || ||||||   |||||||| ||||||||||||||||||    
T  19899546 tgttgtcgatcacccaaacaagggtagtcctcacaaccg 19899584  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 18746845 - 18746917
Alignment:
Q  168 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgactctctg 240  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||    
T  18746845 ttggtttcatgattatgatctttgaaggtgtgttatcgattcgtggtaggcgttatgatattttgactatctg 18746917  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 36204704 - 36204632
Alignment:
Q  168 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgactctctg 240  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  36204704 ttggtttcatgattttgatatttgaaggtgtgtaatcgattcgaggtaggcgttccgatgttttgactctctg 36204632  T

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Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 27286458 - 27286589
Alignment:
Q  26 atatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgttcgttgtggcctgttttctgttggtgt 125  Q
    |||||||||||||||||| |||||| |||| |||||||||| || |||||||| |||||||||||| || ||||||| |||||||| ||| |||||||||    
T  27286458 atatgggtttctataacgcgttggtatgtgattcgaccaccgtcgcgtctgttctgatcggcggacactttgttcgtcgtggcctg-tttatgttggtgt 27286556  T
Q  126 cgaaaccccaaacaggggtagtcctcacaaccg 158  Q
    ||||| |||||||||||||||||||||||||||    
T  27286557 cgaaaacccaaacaggggtagtcctcacaaccg 27286589  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 27286651 - 27286723
Alignment:
Q  168 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgactctctg 240  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27286651 ttggtttcacgattctaatctttgaaggtgtgttatcgattcgaggtaggcgtttcgatgttttgactctctg 27286723  T

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Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 6 - 158
Target Start/End: Complemental strand, 8839860 - 8839709
Alignment:
Q  6 atcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgttcgttgt 105  Q
    |||||||||| |  |||| ||||||||||||||||| | ||||||||||||||| ||||||||| |||||||| |||||| |||||  | ||||||| ||    
T  8839860 atcttttccggcagtctggcatatgggtttctataatgcgttggtgtgtggttccaccaccatcgcgtctgttctgatcgtcggacattatgttcgtcgt 8839761  T
Q  106 ggcctgttttctgttggtgtcgaaaccccaaacaggggtagtcctcacaaccg 158  Q
    |||||| ||| || ||||||||||| |||||||||||||||||||||||||||    
T  8839760 ggcctg-tttatgctggtgtcgaaaacccaaacaggggtagtcctcacaaccg 8839709  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 8839647 - 8839575
Alignment:
Q  168 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgactctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  8839647 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtagacgttccgatgttttgactctctg 8839575  T

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Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 1290261 - 1290359
Alignment:
Q  1 ttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgtt 99  Q
    |||||||||||| || |  |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  1290261 ttttcatctttttcggcagtctgacatatgggtttctataacgtgttggtgtgtggttcgaccaccatcacctctgttctgatcggcggaccctttgtt 1290359  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 9120629 - 9120790
Alignment:
Q  1 ttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgttc 100  Q
    |||||||||||||   || |||| ||||||||||| ||||| | |||||||||||||| ||||||||||  ||||||| ||||||||| || ||||||||    
T  9120629 ttttcatcttttctcgcggtctggcatatgggttt-tataatgcgttggtgtgtggtttgaccaccatcgtgtctgttctgatcggcgaacactctgttc 9120727  T
Q  101 gttgtggcctgttttctgttggtgtcgaaaccccaaacaggggtagtcctcacaaccgccggt 163  Q
    |  ||||||| ||||||| | |||||||||  ||||| |||| ||||||||||| ||| ||||    
T  9120728 gacgtggcctattttctggtagtgtcgaaaagccaaatagggttagtcctcacatccgtcggt 9120790  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 9120835 - 9120907
Alignment:
Q  168 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgactctctg 240  Q
    ||||||||||||||||||||||| ||||| || |||||||| ||||||||||||  |||||||||||||||||    
T  9120835 ttggtttcatgattctgatcttttaaggtatgctatcgatttgaggtaggcgttccgatgttttgactctctg 9120907  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 24521845 - 24521973
Alignment:
Q  25 catatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgttcgttgtggcctgttttctgttggtg 124  Q
    ||||||||||| ||||| | |||||||||||||| ||||||||||  ||||||| ||||||||  || || ||||||| ||||||||||| ||||| |||    
T  24521845 catatgggttt-tataatgcgttggtgtgtggtttgaccaccatcgtgtctgttctgatcggcaaacactatgttcgtcgtggcctgtttcctgttagtg 24521943  T
Q  125 tcgaaaccccaaacaggggtagtcctcaca 154  Q
    ||||||  ||||| |||| |||||||||||    
T  24521944 tcgaaaagccaaaaagggttagtcctcaca 24521973  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 24522039 - 24522111
Alignment:
Q  168 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgactctctg 240  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||  |||||||||||||||||    
T  24522039 ttggtttcatgattctgatattttaaggtgtgctatcgattcgaggtaggagttccgatgttttgactctctg 24522111  T

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