View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0727_low_7 (Length: 514)
Name: NF0727_low_7
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 32943649 - 32943250
Alignment:
| Q |
1 |
aatgggtctaggcctgcgtcaataaatagatgnnnnnnnngttaatttaaaagagattaacttaggttgcctaagaatactagaggcatgctcctatttt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32943649 |
aatgggtctaggcctgcgtcaacaaatagatgtttttt--gttaacttaaaagacattaacttaggttgcctaagaatactagaggtatgctcctatttt |
32943552 |
T |
|
| Q |
101 |
tgagtatgtcatcttaatttgaatatgacagtaaaataatagtgaatgcaatttcaagcatgcaaacttaccaaatccatcaacaaacaatgtatattgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32943551 |
tgagtatgtcatcttaatttgaatatgacagtaaaataatagtgaatgcaatttcaagcatgcaaacttaccaaatccatcaacaaacaatgtatattgg |
32943452 |
T |
|
| Q |
201 |
taaataagatccaagcatgcatatggaagactatcctcataaataagtggatatgtggctttggcatccttatattttgttttacagacttgctcagctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32943451 |
taaataagatccaagcatgcatatggaagactatcctcataaataagtggatatgtggctttggcatccttatattttgttttacagacttgctcagctc |
32943352 |
T |
|
| Q |
301 |
cagttttcagatcctcgatacgaattttggaattgggcttatttggatcagcaatattaacctacacgtgtagacataatattagtagaagttcgatcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
32943351 |
cagttttcagatcctcgatacgaattttggaattgggcttatttggatcagcaatattaacctacacgtgtacaaataatattagtcgaagttcgatcaa |
32943252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 161 - 402
Target Start/End: Complemental strand, 32950672 - 32950431
Alignment:
| Q |
161 |
tgcaaacttaccaaatccatcaacaaacaatgtatattggtaaataagatccaagcatgcatatggaagactatcctcataaataagtggatatgtggct |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32950672 |
tgcaaacttaccaaatccatcaacaaacaatgtatattggtaaataagatccaagcatgcatatggaagactatcctcataaataagtggatatgtggct |
32950573 |
T |
|
| Q |
261 |
ttggcatccttatattttgttttacagacttgctcagctccagttttcagatcctcgatacgaattttggaattgggcttatttggatcagcaatattaa |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32950572 |
ttggcatccttatattttgttttacagacttgctcagctccagttttcagatcctcgatacgaattttggaattgggcttatttggatcagcaatattaa |
32950473 |
T |
|
| Q |
361 |
cctacacgtgtagacataatattagtagaagttcgatcaaga |
402 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
32950472 |
cctacacgtgtacaaataatattagtcgaagttcgatcaaga |
32950431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 416 - 494
Target Start/End: Complemental strand, 32943212 - 32943134
Alignment:
| Q |
416 |
tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgt |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32943212 |
tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgt |
32943134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 416 - 494
Target Start/End: Complemental strand, 32950393 - 32950315
Alignment:
| Q |
416 |
tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgt |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32950393 |
tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgt |
32950315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 32951105 - 32951020
Alignment:
| Q |
1 |
aatgggtctaggcctgcgtcaataaatagatgnnnnnnnn--gttaatttaaaagagattaacttaggttgcctaagaatactaga |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32951105 |
aatgggtctaggcctgcgtcaataaatagatgtttttttcttgttaatttaaaagagattaacttaggttgcctaagaatattaga |
32951020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 10328209 - 10328274
Alignment:
| Q |
164 |
aaacttaccaaatccatcaacaaacaatgtatattggtaaataagatccaagcatgcatatggaag |
229 |
Q |
| |
|
|||| |||| |||||||| |||| ||||||||||||||| | |||||||| |||| ||||||||| |
|
|
| T |
10328209 |
aaacataccgaatccatccacaagcaatgtatattggtatacaagatccatgcataaatatggaag |
10328274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3226 times since January 2019
Visitors: 4808