View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0727_low_8 (Length: 508)

Name: NF0727_low_8
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0727_low_8
NF0727_low_8
[»] chr4 (10 HSPs)
chr4 (190-255)||(2183346-2183411)
chr4 (187-256)||(45413766-45413835)
chr4 (174-239)||(26635244-26635309)
chr4 (169-251)||(34666464-34666546)
chr4 (188-255)||(36625533-36625600)
chr4 (363-417)||(1012357-1012411)
chr4 (368-411)||(20097426-20097469)
chr4 (204-243)||(29539206-29539245)
chr4 (192-255)||(55945653-55945716)
chr4 (182-255)||(33235785-33235858)
[»] chr2 (11 HSPs)
chr2 (186-255)||(40626520-40626589)
chr2 (187-251)||(6457653-6457717)
chr2 (174-239)||(1529661-1529726)
chr2 (204-242)||(18665224-18665262)
chr2 (186-255)||(40054458-40054527)
chr2 (368-417)||(41643938-41643987)
chr2 (186-233)||(3044871-3044918)
chr2 (368-411)||(6177841-6177884)
chr2 (368-417)||(19073424-19073473)
chr2 (214-251)||(39111666-39111703)
chr2 (367-411)||(18059301-18059345)
[»] chr1 (9 HSPs)
chr1 (187-256)||(6768312-6768381)
chr1 (181-255)||(26793808-26793882)
chr1 (186-251)||(9383222-9383287)
chr1 (181-238)||(42471963-42472020)
chr1 (204-255)||(50004909-50004960)
chr1 (193-255)||(19806758-19806820)
chr1 (181-254)||(49236219-49236292)
chr1 (192-239)||(38332376-38332423)
chr1 (187-255)||(4076342-4076410)
[»] chr7 (7 HSPs)
chr7 (181-255)||(24429741-24429815)
chr7 (190-251)||(41482419-41482480)
chr7 (204-255)||(39644955-39645006)
chr7 (206-239)||(45980471-45980504)
chr7 (187-255)||(2333983-2334050)
chr7 (264-308)||(41482548-41482591)
chr7 (190-238)||(45884641-45884689)
[»] chr8 (8 HSPs)
chr8 (352-417)||(6267438-6267503)
chr8 (187-251)||(31734371-31734435)
chr8 (189-255)||(39283758-39283824)
chr8 (182-255)||(22573186-22573259)
chr8 (314-354)||(6267545-6267585)
chr8 (204-255)||(11066534-11066585)
chr8 (182-255)||(9028625-9028698)
chr8 (204-253)||(38503855-38503904)
[»] chr3 (9 HSPs)
chr3 (184-260)||(45850748-45850824)
chr3 (192-251)||(20524907-20524966)
chr3 (186-252)||(32490957-32491023)
chr3 (199-255)||(38457788-38457844)
chr3 (192-251)||(51976243-51976302)
chr3 (185-255)||(40416999-40417069)
chr3 (368-401)||(7568668-7568701)
chr3 (181-238)||(45818592-45818649)
chr3 (211-255)||(44764090-44764134)
[»] chr6 (5 HSPs)
chr6 (174-229)||(16342697-16342752)
chr6 (192-251)||(8547436-8547495)
chr6 (199-251)||(8573796-8573848)
chr6 (264-311)||(14228002-14228048)
chr6 (194-255)||(129102-129163)
[»] chr5 (7 HSPs)
chr5 (204-251)||(13109764-13109811)
chr5 (186-255)||(34731320-34731389)
chr5 (204-251)||(13039770-13039817)
chr5 (368-417)||(31878449-31878498)
chr5 (264-306)||(15416354-15416395)
chr5 (193-230)||(16290716-16290753)
chr5 (364-417)||(25653646-25653699)
[»] scaffold0200 (1 HSPs)
scaffold0200 (368-411)||(24756-24799)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 2183411 - 2183346
Alignment:
Q  190 tgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2183411 tgctatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggat 2183346  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 45413766 - 45413835
Alignment:
Q  187 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggata 256  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  45413766 ttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggata 45413835  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 26635244 - 26635309
Alignment:
Q  174 gcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagg 239  Q
    |||||| |||||||| ||||||||||||| |||||||||||||| ||||||||| ||||| |||||    
T  26635244 gcgcttgatagttttgtgctatcaggttgctaacccaccaaaaactaaggataagaataataaagg 26635309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 34666546 - 34666464
Alignment:
Q  169 aacaagcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 251  Q
    |||| |||||| |||| ||||||||||||||||| |||||||| |||| ||| |||||||||||| |||| | | ||||||||    
T  34666546 aacacgcgcttgatagctttatgctatcaggttgctaacccacaaaaagttacggataaaaataagaaagagggaataggata 34666464  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 36625533 - 36625600
Alignment:
Q  188 tatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||||||||| |||| ||||||| |||||| ||||||| | ||| |||||||||| ||||||||||||    
T  36625533 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggat 36625600  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 1012357 - 1012411
Alignment:
Q  363 cgagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 417  Q
    |||||||||||||||||||  |||||||||||||||||| | ||||||| |||||    
T  1012357 cgagtatttgtgtatttaatccatgtcacgtcagattatatggtgtattgcacat 1012411  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 20097469 - 20097426
Alignment:
Q  368 atttgtgtatttaagtcatgtcacgtcagattatttagtgtatt 411  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||    
T  20097469 atttgtgtatttaattcatgccacgtcagattatatagtgtatt 20097426  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 29539245 - 29539206
Alignment:
Q  204 taacccaccaaaaattaaggataaaaataacaaagggtgg 243  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  29539245 taacccaccaaaaattagggataaaaataacaaatggtgg 29539206  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 55945653 - 55945716
Alignment:
Q  192 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||||| |||||||||||||||||| |||| ||| ||||||| ||| || | ||||||||||||    
T  55945653 ctatcatgttgttaacccaccaaaagttaaagattaaaataagaaatggagaataggataggat 55945716  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 33235785 - 33235858
Alignment:
Q  182 tagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    ||||||||| ||||||  ||| |||| || |||||||||||||||| ||| ||||||| |  ||||||||||||    
T  33235785 tagttttatcctatcatattgctaactcatcaaaaattaaggataataattacaaaggttcaataggataggat 33235858  T

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Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 40626589 - 40626520
Alignment:
Q  186 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||||||    
T  40626589 tttatgctatcaggttgttaacccaccaaaatttaaggataaaaataataaagggtgagtaggataggat 40626520  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 6457717 - 6457653
Alignment:
Q  187 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 251  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6457717 ttatgctattaggtaattaacccaccaaaaattaaggataaaaataacaaagggtggataagata 6457653  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 1529661 - 1529726
Alignment:
Q  174 gcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagg 239  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||| || ||||||||    
T  1529661 gcgcttaatagttttatgctaccagattgctaacccaccaaaaatcaaggataagaacaacaaagg 1529726  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 18665262 - 18665224
Alignment:
Q  204 taacccaccaaaaattaaggataaaaataacaaagggtg 242  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  18665262 taacccaccaaaaattaaggataaaattaacaaagggtg 18665224  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 40054458 - 40054527
Alignment:
Q  186 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    ||||| |||| |||||| ||||||| | |||| ||||||| ||||||||||||| | |||||||||||||    
T  40054458 tttatcctattaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggat 40054527  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 41643938 - 41643987
Alignment:
Q  368 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 417  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| |||||    
T  41643938 atttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacat 41643987  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 3044871 - 3044918
Alignment:
Q  186 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataa 233  Q
    |||| ||||||| |||| ||||| ||||||||||||||||||||||||    
T  3044871 tttaagctatcatgttgctaacctaccaaaaattaaggataaaaataa 3044918  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 6177841 - 6177884
Alignment:
Q  368 atttgtgtatttaagtcatgtcacgtcagattatttagtgtatt 411  Q
    |||||||||||||| ||||||||||||||||||| | |||||||    
T  6177841 atttgtgtatttaattcatgtcacgtcagattatatggtgtatt 6177884  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 19073424 - 19073473
Alignment:
Q  368 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 417  Q
    ||||||||||||||  |||||||||||||||||| | ||||||| |||||    
T  19073424 atttgtgtatttaatccatgtcacgtcagattatatggtgtattccacat 19073473  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 39111666 - 39111703
Alignment:
Q  214 aaaattaaggataaaaataacaaagggtggataggata 251  Q
    |||||||||||||||||||||||||||||  |||||||    
T  39111666 aaaattaaggataaaaataacaaagggtgtgtaggata 39111703  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 18059345 - 18059301
Alignment:
Q  367 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtatt 411  Q
    ||||||||||||||| |||||||| |||||||||| | |||||||    
T  18059345 tatttgtgtatttaattcatgtcatgtcagattatatggtgtatt 18059301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 6768381 - 6768312
Alignment:
Q  187 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggata 256  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  6768381 ttatgctatcaggttcctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggata 6768312  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 26793882 - 26793808
Alignment:
Q  181 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||  |||||||||||    
T  26793882 atagttttatgctatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggat 26793808  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 9383222 - 9383287
Alignment:
Q  186 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 251  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||  |||||||    
T  9383222 tttatgctatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggata 9383287  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 42471963 - 42472020
Alignment:
Q  181 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaag 238  Q
    |||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  42471963 atagctttatgctatcaggttgttaacccaccaaaaactaaggattaaaattacaaag 42472020  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 50004909 - 50004960
Alignment:
Q  204 taacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  50004909 taacccaccaaaaactaaggataaaaataacaaagggtgattaggataggat 50004960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 19806758 - 19806820
Alignment:
Q  193 tatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    ||||||||||||||||||||||||| ||||||| | || ||||||| ||| ||||||||||||    
T  19806758 tatcaggttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggat 19806820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 49236292 - 49236219
Alignment:
Q  181 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggatagga 254  Q
    ||||||||| | |||||||||| ||||||||||||||  |||||||  ||||| ||||| ||| ||||||||||    
T  49236292 atagttttacgatatcaggttgctaacccaccaaaaaccaaggatatgaataagaaaggttgggtaggatagga 49236219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 38332376 - 38332423
Alignment:
Q  192 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagg 239  Q
    ||||||| ||| |||||| ||||||||||| |||||||||||||||||    
T  38332376 ctatcagattgctaaccctccaaaaattaaagataaaaataacaaagg 38332423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 4076342 - 4076410
Alignment:
Q  187 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||| ||||||||||  ||| |||||||||| ||||||| | || ||||||| ||| ||||||||||||    
T  4076342 ttatcctatcaggttcctaatccaccaaaaactaaggattagaaaaacaaagagtgaataggataggat 4076410  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 24429815 - 24429741
Alignment:
Q  181 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  || ||||||||    
T  24429815 atagctttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggat 24429741  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 41482419 - 41482480
Alignment:
Q  190 tgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 251  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||  |||||||    
T  41482419 tgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggata 41482480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 39645006 - 39644955
Alignment:
Q  204 taacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||||||    
T  39645006 taacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggat 39644955  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 45980471 - 45980504
Alignment:
Q  206 acccaccaaaaattaaggataaaaataacaaagg 239  Q
    |||||||||||| |||||||||||||||||||||    
T  45980471 acccaccaaaaagtaaggataaaaataacaaagg 45980504  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 2333983 - 2334050
Alignment:
Q  187 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||||||||| ||||| ||||| ||||||||  |  ||||||||||||||| |||| ||||||||||||    
T  2333983 ttatgctatc-ggttgctaaccaaccaaaaaccagagataaaaataacaaaaggtgaataggataggat 2334050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 41482548 - 41482591
Alignment:
Q  264 gatagtttatatcatatcatgtcttcctatcctgtgcaccaaacg 308  Q
    |||||||| |||| ||||||||||||||||| |||||||||||||    
T  41482548 gatagttt-tatcctatcatgtcttcctatcatgtgcaccaaacg 41482591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 45884641 - 45884689
Alignment:
Q  190 tgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaag 238  Q
    |||| |||| |||||||||| ||||||| | ||||||||||||||||||    
T  45884641 tgctttcagattgttaacccgccaaaaacttaggataaaaataacaaag 45884689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 6267503 - 6267438
Alignment:
Q  352 aaatggtcaaccgagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 417  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||    
T  6267503 aaatggtcaaccgagtatttgtgtatttaagtcatgccacgtcaggttatttggtgtattatacat 6267438  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 31734435 - 31734371
Alignment:
Q  187 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 251  Q
    ||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||||    
T  31734435 ttatgttatcatgttgttaatccaccaaaaactaaggataaaaataacaaagggtggatgggata 31734371  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 39283824 - 39283758
Alignment:
Q  189 atgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||||||||||||| |||||||||||||||||| |||||||| || |||||||| ||| ||||||||    
T  39283824 atgctatcaggttgctaacccaccaaaaattaaagataaaaaaaataaagggtgaatatgataggat 39283758  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 22573259 - 22573186
Alignment:
Q  182 tagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||| ||| ||||||| |  ||||||||||||    
T  22573259 tagttttatcctatcatgttgttaacccaccaaaaactaaggataagaattacaaaggttcaataggataggat 22573186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 6267585 - 6267545
Alignment:
Q  314 taaggcgattgcagaaaggcgagctttgtggttgttggaaa 354  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  6267585 taaggcgattgcggaaaggcgagctttgtggttgttggaaa 6267545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 11066585 - 11066534
Alignment:
Q  204 taacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    ||||| |||||||||||||||||||||||||||||| ||  |||||||||||    
T  11066585 taacctaccaaaaattaaggataaaaataacaaaggctgagtaggataggat 11066534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 9028625 - 9028698
Alignment:
Q  182 tagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    ||||| ||| ||||||||||| ||||||| ||||||  |||||||| ||| ||||||| |  ||||||||||||    
T  9028625 tagttatatcctatcaggttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggat 9028698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 38503855 - 38503904
Alignment:
Q  204 taacccaccaaaaattaaggataaaaataacaaagggtggataggatagg 253  Q
    |||||||||||||| |||  |||||||||||||||||||  |||||||||    
T  38503855 taacccaccaaaaactaaaaataaaaataacaaagggtgagtaggatagg 38503904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 45850748 - 45850824
Alignment:
Q  184 gttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggatataaa 260  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||| || |||| ||| ||||    
T  45850748 gttttatgctatcaggttgctaacccaccaaaaatcaaggataagaataacaaaggctggctaagataagatttaaa 45850824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 20524966 - 20524907
Alignment:
Q  192 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 251  Q
    |||||| |||||||||||||||||||| |||||| ||||| ||||||| | |||||||||    
T  20524966 ctatcaagttgttaacccaccaaaaatcaaggattaaaattacaaaggatagataggata 20524907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 32491023 - 32490957
Alignment:
Q  186 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggatag 252  Q
    ||||| ||||||||||| ||||||| | |||| ||||||| ||||||||||||| | ||||||||||    
T  32491023 tttatcctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggatag 32490957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 38457844 - 38457788
Alignment:
Q  199 gttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||| |||||||||||| | ||||||||||| ||||||| |||| ||||||||||||    
T  38457844 gttgctaacccaccaaatactaaggataaaagtaacaaaaggtgaataggataggat 38457788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 51976302 - 51976243
Alignment:
Q  192 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 251  Q
    ||||||||||||||||||||||||| | |||||| | || |||||| |||| ||||||||    
T  51976302 ctatcaggttgttaacccaccaaaattcaaggattagaaaaacaaatggtgaataggata 51976243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 40417069 - 40416999
Alignment:
Q  185 ttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||| ||||||||||||| ||||| | ||||||  |||||||| ||||| ||||||| | |||||||||||    
T  40417069 ttttgtgctatcaggttgctaaccaaacaaaaaccaaggataagaataataaagggttggtaggataggat 40416999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 401
Target Start/End: Complemental strand, 7568701 - 7568668
Alignment:
Q  368 atttgtgtatttaagtcatgtcacgtcagattat 401  Q
    |||||||||||||| |||||||||||||||||||    
T  7568701 atttgtgtatttaattcatgtcacgtcagattat 7568668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 45818592 - 45818649
Alignment:
Q  181 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaag 238  Q
    |||| |||||||||||| ||||  ||| ||||||||| |||||||||||| |||||||    
T  45818592 ataggtttatgctatcaagttgccaactcaccaaaaactaaggataaaaacaacaaag 45818649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 44764090 - 44764134
Alignment:
Q  211 ccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    ||||||| ||||||||||||||| ||| ||||| |||||||||||    
T  44764090 ccaaaaactaaggataaaaataaaaaaaggtgggtaggataggat 44764134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 16342697 - 16342752
Alignment:
Q  174 gcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaa 229  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  16342697 gcgcttgatagatttatgctatcaggttgctaacccaccaaaaattaaggataaaa 16342752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 8547436 - 8547495
Alignment:
Q  192 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 251  Q
    |||||| |||| |||||||||||||| |||| ||||||||||||||||||| ||| ||||    
T  8547436 ctatcatgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgata 8547495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 8573796 - 8573848
Alignment:
Q  199 gttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 251  Q
    |||| |||||||||||||| |||| ||||||||||||||||||| ||| ||||    
T  8573796 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgata 8573848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 14228002 - 14228048
Alignment:
Q  264 gatagtttatatcatatcatgtcttcctatcctgtgcaccaaacgact 311  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  14228002 gatagttt-tatcatatcatgtcttcttatcctatgcaccaaacgact 14228048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 129102 - 129163
Alignment:
Q  194 atcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    |||| |||| || |||| |||||| ||| |||||||||||||||||||| ||| ||||||||    
T  129102 atcatgttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggat 129163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 13109811 - 13109764
Alignment:
Q  204 taacccaccaaaaattaaggataaaaataacaaagggtggataggata 251  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  13109811 taacccaccaaaaactaaggataaaaataacaaagggtggataggata 13109764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 34731389 - 34731320
Alignment:
Q  186 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 255  Q
    ||||| ||||||||||| ||||||| | |||| ||||||| ||||||||||||| | |||||||||||||    
T  34731389 tttatcctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggat 34731320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 13039817 - 13039770
Alignment:
Q  204 taacccaccaaaaattaaggataaaaataacaaagggtggataggata 251  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  13039817 taacccaccaaaaactaaggataaaaataataaaggatggataggata 13039770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 31878449 - 31878498
Alignment:
Q  368 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 417  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| |||||    
T  31878449 atttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacat 31878498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 15416354 - 15416395
Alignment:
Q  264 gatagtttatatcatatcatgtcttcctatcctgtgcaccaaa 306  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  15416354 gatagttt-tatcatatcatgtcttcctatcatgtgcaccaaa 15416395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 16290716 - 16290753
Alignment:
Q  193 tatcaggttgttaacccaccaaaaattaaggataaaaa 230  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  16290716 tatcaagttgctaacccaccaaaaattaaggataaaaa 16290753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 25653646 - 25653699
Alignment:
Q  364 gagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 417  Q
    |||||||||||||||||| |||| |||||||||||| | | ||||||| |||||    
T  25653646 gagtatttgtgtatttaattcatatcacgtcagattgtatggtgtattgcacat 25653699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 24799 - 24756
Alignment:
Q  368 atttgtgtatttaagtcatgtcacgtcagattatttagtgtatt 411  Q
    |||||||||||||| ||||||||||||||||||| | |||||||    
T  24799 atttgtgtatttaattcatgtcacgtcagattatatggtgtatt 24756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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