View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0727_low_9 (Length: 498)
Name: NF0727_low_9
Description: NF0727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0727_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 215 - 469
Target Start/End: Complemental strand, 39404064 - 39403811
Alignment:
| Q |
215 |
gatgatatgctgctgcaatatatttttgggttaatggagaatttgattcggggttttgagtttagaacaaggatgaacataacaatgagtttcatgccat |
314 |
Q |
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| T |
39404064 |
gatgatatgctgctgcaatatatttttgggttaatggagaatttgattcggggttttgagtttagaacaaggatgaacataacaatgagtttcatgccat |
39403965 |
T |
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| Q |
315 |
tttaaagtgtatttgaatagacattttttgtttgttgatggaagaaggcgatgataaaaatatgaagataagattatgccatgtggcttaccaattcacc |
414 |
Q |
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| T |
39403964 |
tt-aaagtgtatttgaatagacattttttgtttgttgatggaagaaggcgatgataaaaatatgaagataagattatgccatgtggcttaccaattcacc |
39403866 |
T |
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| Q |
415 |
atttttgtagaaaaatatttacttgtaatgagttttgcaaataaacagataaaaa |
469 |
Q |
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| T |
39403865 |
atttttgtagaaaaatatttacttgtaatgagttttgcaaataaacagataaaaa |
39403811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 39404268 - 39404143
Alignment:
| Q |
11 |
cacagactcttacattagaattttcttatacaatctccagcctaattttcctcatctcctttaccatcagcaacttggagttatatatacttgtttaaat |
110 |
Q |
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| T |
39404268 |
cacagactcttacattagaattttcttatacaatctccagcctaattttcctcatctcctttaccatcagcaacttggagttatatatacttgtttaaat |
39404169 |
T |
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| Q |
111 |
atatggacccactttccatgcaattc |
136 |
Q |
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| T |
39404168 |
atatggacccactttccatgcaattc |
39404143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 47757753 - 47757682
Alignment:
| Q |
16 |
actcttacattagaattttcttatacaatctccagcctaattttcctcatctcctttaccatcagcaacttg |
87 |
Q |
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| T |
47757753 |
actctaacattagaacttgctgatacaatctccagcctaatttgcctcatctcctttaccatcagcaacttg |
47757682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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