View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0728_high_11 (Length: 317)
Name: NF0728_high_11
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_high_11 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 42281157 - 42280854
Alignment:
| Q |
4 |
ggatttaccctcttccttgaatgctactagagatacatttaagtattgaatctgctaggtctcttgatcaatctcttaggcctttgatttggtgtatcac |
103 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42281157 |
ggatttaccctcttccttgaatgctactagatatacatttaagtattgaatctgctaggtctcttgatcaatctcttaggcctttgatttggtctatcac |
42281058 |
T |
|
| Q |
104 |
tagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatgagatcctatttgctttgtaacacaagcctc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42281057 |
tagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatgagatcctatttgctttgtaacacaagcctc |
42280958 |
T |
|
| Q |
204 |
aatggttcgtgtacattcatttgagtgatgttgcattgatggttttactaccttttgatc-nnnnnnnnnctccttacatagatcttcaacactttgggc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
42280957 |
aatggttcgtgtacattcatttgagtgatgttgcattgatggttttactaccttttgatcttttttgtttctcctcgcatagatcttcaacactttgggc |
42280858 |
T |
|
| Q |
303 |
ctat |
306 |
Q |
| |
|
|||| |
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|
| T |
42280857 |
ctat |
42280854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 42269386 - 42269083
Alignment:
| Q |
4 |
ggatttaccctcttccttgaatgctactagagatacatttaagtattgaatctgctaggtctcttgatcaatctcttaggcctttgatttggtgtatcac |
103 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42269386 |
ggatttaccctcttccttgaatgcttctagagatacatttaagtattgaatctgctaggtctcttgatcaatctcttgggcctttgatttggtgtatcac |
42269287 |
T |
|
| Q |
104 |
tagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatgagatcctatttgctttgtaacacaagcctc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42269286 |
tagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatgagatcctatttgctttgtaacacaagcctc |
42269187 |
T |
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| Q |
204 |
aatggttcgtgtacattcatttgagtgatgttgcattgatggttttactaccttttgatc-nnnnnnnnnctccttacatagatcttcaacactttgggc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||| |
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| T |
42269186 |
aatggttcgtgtacattcatttgagtgatgttgcattgatggatttactacctttcggtcttttttgtttctccttacatagatcttcaacactttgggc |
42269087 |
T |
|
| Q |
303 |
ctat |
306 |
Q |
| |
|
|||| |
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|
| T |
42269086 |
ctat |
42269083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 42254797 - 42254612
Alignment:
| Q |
4 |
ggatttaccctcttccttgaatgctactagagatacatttaagtattgaatctgctaggtctcttgatcaatctcttaggcctttgatttggtgtatcac |
103 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42254797 |
ggatttaccctcttccttgaatgcttatagagatacatttaagtattgaatctgctaggtctcttgatcaatctcttaggcctttgatttggtgtatcac |
42254698 |
T |
|
| Q |
104 |
tagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatgagatcctatttgcttt |
189 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42254697 |
tagaatttgtacccacctttattggaccatttttgtctcttgtattaggtccctcttgatttgtatcatgggatcctatttgcttt |
42254612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 42260324 - 42260156
Alignment:
| Q |
4 |
ggatttaccctcttccttgaatgctactagagatacatttaagtattgaatctgctaggtctcttgatcaatctcttaggcctttgatttggtgtatcac |
103 |
Q |
| |
|
||||||| ||| |||||||| ||||| ||| ||| |||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
42260324 |
ggatttatcctattccttga-tgctaatagcaatatatttaattattgaatctgctaggtctcttgatcaatctcttgggcctttgttttggtgtatcac |
42260226 |
T |
|
| Q |
104 |
tagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatg |
173 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42260225 |
tagaatttgtatccacctttattggatcatttttgtttcttgtattaggtccctcttgatttgtatcatg |
42260156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 42309930 - 42309880
Alignment:
| Q |
213 |
tgtacattcatttgagtgatgttgcattgatggttttactaccttttgatc |
263 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| ||| ||||||||| |
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|
| T |
42309930 |
tgtacattcatttgagtgatgttgcactgatgaattttctatcttttgatc |
42309880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 42313897 - 42313847
Alignment:
| Q |
213 |
tgtacattcatttgagtgatgttgcattgatggttttactaccttttgatc |
263 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| ||| ||| ||||||||| |
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| T |
42313897 |
tgtacattcatttgagtggtgttgcactgatggattttctatcttttgatc |
42313847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 489159 - 488991
Alignment:
| Q |
4 |
ggatttaccctcttccttgaatgctactagagatacatttaagtattgaatctgctaggtctcttgatcaatctcttaggcctttgatttggtgtatcac |
103 |
Q |
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|
||||||| ||| |||||||| ||||| ||| ||| |||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
489159 |
ggatttatcctattccttga-tgctaatagcaatatatttaattattgaatctgctaggtctcttgatcaatctcttgggcctttgttttggtgtatcac |
489061 |
T |
|
| Q |
104 |
tagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatg |
173 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
489060 |
tagaatttgtatccacctttattggatcatttttgtttcttgtattaggtccctcttgatttgtatcatg |
488991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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