View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0728_high_20 (Length: 250)

Name: NF0728_high_20
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0728_high_20
NF0728_high_20
[»] chr2 (29 HSPs)
chr2 (176-236)||(29524244-29524304)
chr2 (179-227)||(40808925-40808973)
chr2 (179-227)||(5280693-5280741)
chr2 (176-227)||(25571941-25571992)
chr2 (176-227)||(33198847-33198898)
chr2 (176-222)||(19263996-19264042)
chr2 (178-222)||(6110387-6110431)
chr2 (176-223)||(18454962-18455009)
chr2 (176-227)||(45660259-45660310)
chr2 (176-222)||(38070912-38070958)
chr2 (176-209)||(13822970-13823003)
chr2 (178-227)||(18834104-18834153)
chr2 (178-222)||(28599335-28599379)
chr2 (178-222)||(41528186-41528230)
chr2 (176-227)||(8784308-8784359)
chr2 (176-222)||(14873857-14873904)
chr2 (176-227)||(28858206-28858257)
chr2 (176-227)||(33635249-33635300)
chr2 (179-222)||(45085188-45085231)
chr2 (177-223)||(6766149-6766195)
chr2 (181-227)||(11616925-11616971)
chr2 (177-227)||(15858802-15858852)
chr2 (176-222)||(21539670-21539716)
chr2 (176-222)||(43451429-43451475)
chr2 (178-215)||(3201265-3201302)
chr2 (177-222)||(15068660-15068705)
chr2 (182-227)||(35832331-35832376)
chr2 (179-227)||(4033867-4033915)
chr2 (178-222)||(35517052-35517096)
[»] chr7 (33 HSPs)
chr7 (176-227)||(47778669-47778720)
chr7 (178-222)||(16562678-16562722)
chr7 (178-222)||(16602940-16602984)
chr7 (179-223)||(46760443-46760487)
chr7 (176-227)||(36576330-36576381)
chr7 (143-222)||(47557933-47558012)
chr7 (176-222)||(30082276-30082322)
chr7 (177-222)||(25944474-25944519)
chr7 (178-222)||(18102459-18102503)
chr7 (176-227)||(15995611-15995662)
chr7 (143-222)||(19912955-19913034)
chr7 (179-222)||(39174181-39174224)
chr7 (176-222)||(18800919-18800965)
chr7 (177-223)||(28843655-28843701)
chr7 (178-227)||(35069047-35069096)
chr7 (179-227)||(9157990-9158038)
chr7 (178-222)||(14805800-14805844)
chr7 (178-222)||(15252794-15252838)
chr7 (176-220)||(21761939-21761983)
chr7 (176-220)||(38260231-38260275)
chr7 (178-222)||(45485883-45485927)
chr7 (176-227)||(22631984-22632035)
chr7 (181-227)||(31280611-31280658)
chr7 (176-215)||(31550103-31550142)
chr7 (176-227)||(41890411-41890462)
chr7 (176-227)||(45598816-45598867)
chr7 (176-226)||(15739457-15739506)
chr7 (178-220)||(37767214-37767256)
chr7 (176-222)||(44600358-44600404)
chr7 (178-223)||(4910849-4910894)
chr7 (176-209)||(6190942-6190975)
chr7 (178-222)||(25737813-25737857)
chr7 (178-222)||(35923182-35923226)
[»] chr5 (25 HSPs)
chr5 (177-227)||(38130329-38130379)
chr5 (176-227)||(12730200-12730251)
chr5 (178-222)||(11262071-11262115)
chr5 (176-227)||(42273546-42273597)
chr5 (176-222)||(9957634-9957680)
chr5 (176-222)||(16286281-16286327)
chr5 (177-223)||(39505449-39505495)
chr5 (177-222)||(8225361-8225406)
chr5 (178-227)||(25840762-25840811)
chr5 (180-227)||(104433-104480)
chr5 (176-227)||(32433570-32433621)
chr5 (176-222)||(20643911-20643957)
chr5 (176-222)||(34425227-34425273)
chr5 (178-222)||(842753-842797)
chr5 (178-222)||(37522777-37522821)
chr5 (178-222)||(37562949-37562993)
chr5 (176-227)||(12793020-12793071)
chr5 (176-227)||(35462911-35462962)
chr5 (177-227)||(25962645-25962695)
chr5 (182-227)||(38280748-38280793)
chr5 (178-222)||(6686313-6686357)
chr5 (176-227)||(17351277-17351329)
chr5 (182-222)||(30086746-30086786)
chr5 (176-232)||(41625720-41625776)
chr5 (178-222)||(43590149-43590193)
[»] chr8 (32 HSPs)
chr8 (176-227)||(4047108-4047159)
chr8 (176-227)||(35525493-35525544)
chr8 (179-227)||(30576041-30576089)
chr8 (176-222)||(24510883-24510929)
chr8 (176-222)||(34890393-34890439)
chr8 (178-222)||(7022591-7022635)
chr8 (178-222)||(7858456-7858500)
chr8 (176-222)||(8107837-8107884)
chr8 (176-227)||(13144175-13144226)
chr8 (176-227)||(24892733-24892784)
chr8 (176-227)||(36190666-36190717)
chr8 (176-227)||(36537974-36538025)
chr8 (176-222)||(13143659-13143705)
chr8 (176-222)||(17713137-17713183)
chr8 (177-222)||(8711772-8711817)
chr8 (179-220)||(15958105-15958146)
chr8 (179-227)||(7499623-7499671)
chr8 (178-222)||(26954592-26954636)
chr8 (179-227)||(41809017-41809065)
chr8 (176-227)||(11043973-11044024)
chr8 (176-227)||(16635355-16635406)
chr8 (176-227)||(16635491-16635542)
chr8 (176-227)||(24612674-24612725)
chr8 (180-227)||(28348511-28348557)
chr8 (176-227)||(35344282-35344333)
chr8 (177-227)||(29920485-29920535)
chr8 (178-222)||(41086574-41086619)
chr8 (176-212)||(2238791-2238827)
chr8 (178-222)||(8673298-8673342)
chr8 (178-222)||(20051506-20051549)
chr8 (179-227)||(25321780-25321828)
chr8 (177-209)||(43216587-43216619)
[»] chr4 (33 HSPs)
chr4 (176-227)||(39078052-39078103)
chr4 (178-227)||(35529568-35529617)
chr4 (176-236)||(16605032-16605092)
chr4 (178-222)||(41414789-41414833)
chr4 (176-227)||(17186988-17187039)
chr4 (176-227)||(48793832-48793883)
chr4 (176-221)||(55580562-55580607)
chr4 (178-222)||(2229175-2229219)
chr4 (178-222)||(14332687-14332731)
chr4 (178-222)||(28669180-28669224)
chr4 (179-223)||(42915427-42915471)
chr4 (176-227)||(5222457-5222508)
chr4 (176-227)||(32012486-32012537)
chr4 (176-227)||(52712973-52713024)
chr4 (176-222)||(8013281-8013327)
chr4 (176-222)||(37911798-37911844)
chr4 (178-227)||(30012112-30012161)
chr4 (183-227)||(21181122-21181166)
chr4 (178-222)||(47867807-47867851)
chr4 (176-227)||(4058609-4058660)
chr4 (176-227)||(12002841-12002892)
chr4 (176-223)||(35310953-35311000)
chr4 (176-227)||(39970148-39970199)
chr4 (176-227)||(50768355-50768406)
chr4 (177-222)||(5483489-5483535)
chr4 (176-222)||(29180576-29180622)
chr4 (181-219)||(29581590-29581628)
chr4 (177-227)||(37788362-37788412)
chr4 (176-222)||(53848381-53848427)
chr4 (182-227)||(19351740-19351785)
chr4 (178-223)||(47516382-47516427)
chr4 (178-222)||(7654555-7654599)
chr4 (178-222)||(26916253-26916297)
[»] chr3 (34 HSPs)
chr3 (176-227)||(46557374-46557425)
chr3 (143-222)||(11054454-11054533)
chr3 (176-222)||(14752385-14752431)
chr3 (177-219)||(37042566-37042608)
chr3 (178-222)||(23910641-23910685)
chr3 (176-227)||(7866655-7866706)
chr3 (138-220)||(36546435-36546518)
chr3 (138-220)||(36561797-36561880)
chr3 (177-227)||(37074860-37074910)
chr3 (185-227)||(50730016-50730058)
chr3 (185-227)||(50782794-50782836)
chr3 (176-222)||(54465068-54465114)
chr3 (177-222)||(22479212-22479257)
chr3 (182-227)||(47867087-47867132)
chr3 (179-227)||(6752571-6752619)
chr3 (178-222)||(23311739-23311783)
chr3 (178-222)||(30189503-30189547)
chr3 (176-212)||(32322409-32322445)
chr3 (176-220)||(33974738-33974782)
chr3 (179-215)||(47864125-47864161)
chr3 (191-227)||(51311587-51311623)
chr3 (176-223)||(2927189-2927236)
chr3 (176-215)||(6074983-6075022)
chr3 (176-227)||(19463975-19464026)
chr3 (179-214)||(29676896-29676931)
chr3 (176-222)||(1335024-1335070)
chr3 (177-211)||(20847460-20847494)
chr3 (176-222)||(41476506-41476551)
chr3 (177-227)||(53270133-53270183)
chr3 (176-209)||(6437980-6438013)
chr3 (177-222)||(46580451-46580496)
chr3 (178-222)||(2994576-2994620)
chr3 (179-227)||(16739310-16739358)
chr3 (179-211)||(51255105-51255137)
[»] chr1 (35 HSPs)
chr1 (176-227)||(44149045-44149096)
chr1 (176-222)||(15959858-15959904)
chr1 (176-227)||(4672796-4672847)
chr1 (176-227)||(7468166-7468217)
chr1 (176-227)||(28016957-28017008)
chr1 (176-227)||(47600253-47600304)
chr1 (176-222)||(6786734-6786780)
chr1 (178-222)||(2125967-2126011)
chr1 (176-236)||(6787195-6787255)
chr1 (178-222)||(12449154-12449198)
chr1 (178-222)||(32624193-32624237)
chr1 (178-222)||(39555773-39555817)
chr1 (176-227)||(1820312-1820363)
chr1 (176-227)||(26907285-26907336)
chr1 (177-220)||(33431458-33431501)
chr1 (177-227)||(47026392-47026442)
chr1 (178-223)||(42965999-42966044)
chr1 (178-222)||(35691321-35691365)
chr1 (178-222)||(43667487-43667531)
chr1 (176-227)||(298880-298931)
chr1 (176-227)||(6785353-6785404)
chr1 (176-227)||(24728840-24728891)
chr1 (176-227)||(25990661-25990712)
chr1 (176-227)||(28916711-28916762)
chr1 (176-227)||(29488661-29488712)
chr1 (176-227)||(40219970-40220021)
chr1 (176-222)||(5950355-5950401)
chr1 (176-222)||(15285717-15285763)
chr1 (177-223)||(51339096-51339142)
chr1 (176-209)||(16854032-16854065)
chr1 (189-222)||(32983357-32983390)
chr1 (176-209)||(46542878-46542911)
chr1 (54-94)||(1800965-1801005)
chr1 (187-227)||(3875236-3875276)
chr1 (178-222)||(24190401-24190444)
[»] scaffold0009 (1 HSPs)
scaffold0009 (179-227)||(157694-157742)
[»] scaffold0132 (2 HSPs)
scaffold0132 (177-227)||(910-960)
scaffold0132 (177-227)||(8870-8920)
[»] scaffold0045 (1 HSPs)
scaffold0045 (178-222)||(77887-77931)
[»] chr6 (7 HSPs)
chr6 (178-222)||(3095908-3095952)
chr6 (178-222)||(21542348-21542392)
chr6 (178-222)||(34177828-34177872)
chr6 (178-222)||(35129242-35129286)
chr6 (176-226)||(1576870-1576919)
chr6 (181-227)||(2851479-2851525)
chr6 (179-227)||(30949051-30949099)
[»] scaffold0442 (1 HSPs)
scaffold0442 (182-222)||(9979-10019)
[»] scaffold0018 (1 HSPs)
scaffold0018 (179-222)||(154792-154835)
[»] scaffold0774 (1 HSPs)
scaffold0774 (182-222)||(3615-3655)
[»] scaffold0300 (1 HSPs)
scaffold0300 (178-222)||(760-804)


Alignment Details
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 29524304 - 29524244
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctatgtattattg 236  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  29524304 ctcattttctttgtcccaaaatataagtaaaaaagacaaacttttattctatttaatattg 29524244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 40808973 - 40808925
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40808973 attttctttgtcccaaaatataagcaaaaaagacaaatttttattctat 40808925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 5280741 - 5280693
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  5280741 attttctttgtcccaaaatataagcaaaaaagacaaatttttatcctat 5280693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 25571941 - 25571992
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  25571941 ctcattttctttgtcccaaaatataagcaaaaaaaacaaacttttattctat 25571992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 33198898 - 33198847
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  33198898 ctcattttctttgtcccaaaatataagcaaaaaagacaaaattttatcctat 33198847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 19263996 - 19264042
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||    
T  19263996 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttat 19264042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 6110431 - 6110387
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  6110431 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 6110387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 18454962 - 18455009
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    |||||||||||||||| |||||||||| |||||||| |||||||||||    
T  18454962 ctcattttctttgtcctaaaatataagcaaaaaagataaatttttatt 18455009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 45660259 - 45660310
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||| ||||| |||||| ||||    
T  45660259 ctcattttctttgtcccaaaatataagcaaaaaaaacaaacttttatcctat 45660310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 38070912 - 38070958
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||| |||||| |||||||||||| ||||||    
T  38070912 ctcattttctttgtcccaaattataagcaaaaaagacaaacttttat 38070958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 13823003 - 13822970
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaa 209  Q
    ||||||||||||||||||||||||||||||||||    
T  13823003 ctcattttctttgtcccaaaatataagtaaaaaa 13822970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 18834153 - 18834104
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||| ||||||||  || |||||||||||    
T  18834153 cattttctttgtcccaaaatataagcaaaaaagatcaacttttattctat 18834104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 28599379 - 28599335
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||    
T  28599379 cattttctttgtcccaaaatataatcaaaaaagacaaacttttat 28599335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 41528186 - 41528230
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||| |||||||||||||||||| |||||||||||| ||||||    
T  41528186 cattttgtttgtcccaaaatataagcaaaaaagacaaacttttat 41528230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 8784308 - 8784359
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||| ||||||||| ||||||||||||||||||||| || |||||| ||||    
T  8784308 ctcatattctttgtctcaaaatataagtaaaaaagaccaacttttatgctat 8784359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 14873857 - 14873904
Alignment:
Q  176 ctcattttctttgtcccaaaatataag-taaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||||||||  |||||| ||||||||||||    
T  14873857 ctcattttctttgtcccaaaatataagcaaaaaaaaacaaatttttat 14873904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 28858206 - 28858257
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||| |||||||||| |||||| ||||| |||||| ||||    
T  28858206 ctcattttctttgtcctaaaatataagcaaaaaatacaaacttttatcctat 28858257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 33635249 - 33635300
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||| ||||||||| || |||||| ||||    
T  33635249 ctcattttctttgtctcaaaatataagcaaaaaagaccaacttttatgctat 33635300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 45085188 - 45085231
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||    
T  45085188 attttctttgtcccaaaatataagcaaaaaagataaacttttat 45085231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 6766195 - 6766149
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    ||||||||||||| ||| ||| ||||||||||||| |||||||||||    
T  6766195 tcattttctttgttccagaatgtaagtaaaaaagataaatttttatt 6766149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 11616925 - 11616971
Alignment:
Q  181 tttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||| ||||||||||||||||||| ||| |||||| ||||    
T  11616925 tttctttgtcctaaaatataagtaaaaaagataaacttttatcctat 11616971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 15858852 - 15858802
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||| ||||||||| ||||||||||||||||||||| || |||||| ||||    
T  15858852 tcatattctttgtctcaaaatataagtaaaaaagaccaaattttatgctat 15858802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 21539670 - 21539716
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||| ||||||||||| ||||||||| || ||||||    
T  21539670 ctcattttctttgtctcaaaatataagcaaaaaagaccaacttttat 21539716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 43451429 - 43451475
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||  ||||||||||||||||||||  |||||||||    
T  43451429 ctcattttctttgtatcaaaatataagtaaaaaagatcaatttttat 43451475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 3201265 - 3201302
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaa 215  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  3201265 cattttctttatcccaaaatataagcaaaaaagacaaa 3201302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 15068660 - 15068705
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||| ||||||||||| ||||||||  |||||||||    
T  15068660 tcattttctttgtctcaaaatataagcaaaaaagatcaatttttat 15068705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 35832331 - 35832376
Alignment:
Q  182 ttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||| ||||||||||| |||||||||| |||||||| ||||    
T  35832331 ttctttgtctcaaaatataagcaaaaaagacatatttttatgctat 35832376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 4033915 - 4033867
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||| ||||||||||| ||||||||  ||||||||| ||||    
T  4033915 attttctttgtctcaaaatataagcaaaaaagatcaatttttatgctat 4033867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 35517052 - 35517096
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||| || |||||||||||| |||||||||||| ||||||    
T  35517052 cattttcttcgtaccaaaatataagcaaaaaagacaaacttttat 35517096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 47778669 - 47778720
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47778669 ctcattttctttgtcccaaaatataagcaaaaaagacaaatttttattctat 47778720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 16562678 - 16562722
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16562678 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 16562722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 16602984 - 16602940
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16602984 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 16602940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 46760487 - 46760443
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  46760487 attttctttgtcccaaaatataagtaaaaaagacaaacttttatt 46760443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 36576330 - 36576381
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||| ||||    
T  36576330 ctcattttctttgtctcaaaatataagtaaaaaagacaaacttttatgctat 36576381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 47558012 - 47557933
Alignment:
Q  143 tactccctccgtcccataatgtaagnnnnnnnnctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||| ||||        | ||||||||||||||||||||||||| |||||||||||| ||||||    
T  47558012 tactccctccgtcccataatataagaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttat 47557933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 30082276 - 30082322
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  30082276 ctcattttctttgtcccaaaatataagcaaaaaagaccaatttttat 30082322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 25944474 - 25944519
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||    
T  25944474 tcattttctttgtcccaaaatataagcaaaaaagacaaacttttat 25944519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 18102459 - 18102503
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  18102459 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 18102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 15995611 - 15995662
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||| ||| |||||||||| ||||||| ||||||||||||||||||||||||    
T  15995611 ctcactttgtttgtcccaatatataagaaaaaaagacaaatttttattctat 15995662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 19913034 - 19912955
Alignment:
Q  143 tactccctccgtcccataatgtaagnnnnnnnnctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||| ||||        | |||||||||| ||||||||||||| ||||||||||||| ||||||    
T  19913034 tactccctccgtcccataatataagcaaaataacacattttctttatcccaaaatataaataaaaaagacaaacttttat 19912955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 39174181 - 39174224
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  39174181 attttctttgttccaaaatataagtaaaaaagacaaacttttat 39174224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 18800965 - 18800919
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||||    
T  18800965 ctcattttctttgtcccaaaatataagcaaaaaagacatacttttat 18800919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 28843701 - 28843655
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||    
T  28843701 tcattttctttatcccaaaatataagtaaaaaggataaatttttatt 28843655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 35069096 - 35069047
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||| |||||||||||||||||||||||| |||||| |||||| ||||    
T  35069096 cattttttttgtcccaaaatataagtaaaaatgacaaacttttatcctat 35069047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 9157990 - 9158038
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||| |||||||||||||  |||||||||||| |||||||||||    
T  9157990 attttctttatcccaaaatataatcaaaaaagacaaacttttattctat 9158038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 14805800 - 14805844
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||    
T  14805800 cattttctttgtcccaaaatataagcaaaacagacaaacttttat 14805844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 15252794 - 15252838
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||    
T  15252794 cattttctttgtcccaaaatataagcaaaacagacaaacttttat 15252838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 21761983 - 21761939
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaattttt 220  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||    
T  21761983 ctcattttttttgtctcaaattataagtaaaaaagacaaattttt 21761939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 38260231 - 38260275
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaattttt 220  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||    
T  38260231 ctcattttctttgtcccaaattataagtaaaaaatacaaactttt 38260275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 45485883 - 45485927
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||| |||||||||| |||||||||||| ||||||    
T  45485883 cattttctttgtccaaaaatataagcaaaaaagacaaaattttat 45485927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 22631984 - 22632035
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||| | |||||||||| ||||| |||||| |||||||||||    
T  22631984 ctcattttctttgttctaaaatataagcaaaaaggacaaacttttattctat 22632035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 31280658 - 31280611
Alignment:
Q  181 tttctttgtcccaaaatataagtaa-aaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  31280658 tttctttgtcccaaaatataagtaaaaaaatacaaatttttatcctat 31280611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 31550142 - 31550103
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaa 215  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  31550142 ctcaatttctttgtcccaaaatgtaagtaaaaaagacaaa 31550103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 41890462 - 41890411
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||| ||||||||| ||||||||||| ||||||||| ||||||||| ||||    
T  41890462 ctcatattctttgtctcaaaatataagcaaaaaagaccaatttttatgctat 41890411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 45598816 - 45598867
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||| ||||||||| ||||||||||| ||||||||| ||||||||| ||||    
T  45598816 ctcatgttctttgtctcaaaatataagcaaaaaagactaatttttatgctat 45598867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 15739457 - 15739506
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattcta 226  Q
    |||||||||||| ||| |||||||||| |||||||| ||||||||||||||    
T  15739457 ctcattttctttatcctaaaatataag-aaaaaagataaatttttattcta 15739506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 37767256 - 37767214
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaattttt 220  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||    
T  37767256 cattttctttgtcctaaattataagtaaaaaagacaaactttt 37767214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 44600358 - 44600404
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||| ||||||||||| ||||||||| || ||||||    
T  44600358 ctcattttctttgtctcaaaatataagcaaaaaagaccaacttttat 44600404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 4910894 - 4910849
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    ||||||||||||||||||||||||| |||||  ||||| |||||||    
T  4910894 cattttctttgtcccaaaatataagcaaaaagaacaaacttttatt 4910849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 6190942 - 6190975
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaa 209  Q
    ||||||||||||||||||||||||||| ||||||    
T  6190942 ctcattttctttgtcccaaaatataagaaaaaaa 6190975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 25737857 - 25737813
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||| | ||| ||||||    
T  25737857 cattttctttgtcccaaaatataagcaaaaaaaaaaaacttttat 25737813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 35923182 - 35923226
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||  |||||||| ||| ||||||    
T  35923182 cattttctttgtcccaaaatataataaaaaaagataaacttttat 35923226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 38130379 - 38130329
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38130379 tcattttctttgtcccaaaatataagtaaaaaagataaatttttattctat 38130329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 12730251 - 12730200
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  12730251 ctcattttctttgtcccaaaatataagtaaaaaagacaaacttttatcctat 12730200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 11262115 - 11262071
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  11262115 cattttctttgtcccaaaatataagtaaaaaagacaaacttttat 11262071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 42273546 - 42273597
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  42273546 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctat 42273597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 9957680 - 9957634
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||    
T  9957680 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttat 9957634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 16286327 - 16286281
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  16286327 ctcattttctttgtctcaaaatataagtaaaaaagacaaacttttat 16286281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 39505495 - 39505449
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||    
T  39505495 tcattttctttgtcccaaaatataagcaaaaaagacaaacttttatt 39505449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 8225361 - 8225406
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||    
T  8225361 tcattttctttgtcccaaaatataagcaaaaaagacaaacttttat 8225406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 25840762 - 25840811
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  25840762 cattttctttgtcccaaaatataagcaaaaatgacaaacttttattctat 25840811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 104480 - 104433
Alignment:
Q  180 ttttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  104480 ttttctctgtcccaaaatataagtaaaaaagacaaacttttatcctat 104433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 32433570 - 32433621
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  32433570 ctcatattctttgtctcaaaatataagcaaaaaagacaaatttttatactat 32433621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 20643911 - 20643957
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||| |||||||||||||| |||||||||||| ||||||    
T  20643911 ctcattttctttatcccaaaatataagcaaaaaagacaaacttttat 20643957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 34425227 - 34425273
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||| |||||||||| |||||||||||| ||||||    
T  34425227 ctcattttctttgtcctaaaatataagcaaaaaagacaaacttttat 34425273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 842797 - 842753
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||| ||| ||||||    
T  842797 cattttctttgtcccaaaatataagcaaaaaagataaacttttat 842753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 37522821 - 37522777
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||    
T  37522821 cattttcttcgtcccaaaatataagcaaaaaagacaaacttttat 37522777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 37562993 - 37562949
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||    
T  37562993 cattttcttcgtcccaaaatataagcaaaaaagacaaacttttat 37562949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 12793071 - 12793020
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||| |||||||||||| |||||| ||||| |||||| ||||    
T  12793071 ctcattttctttgttccaaaatataagcaaaaaatacaaacttttatcctat 12793020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 35462962 - 35462911
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||| ||||||||| || |||||| ||||    
T  35462962 ctcattttctttgtctcaaaatataagcaaaaaagaccaacttttatgctat 35462911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 25962695 - 25962645
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||| ||||||||||| |||||| ||||| |||||| ||||    
T  25962695 tcattttctttgtctcaaaatataagcaaaaaatacaaacttttatgctat 25962645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 38280748 - 38280793
Alignment:
Q  182 ttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||| |||||||||| ||||||||||||| |||||| ||||    
T  38280748 ttctttgtctcaaaatataaataaaaaagacaaacttttatcctat 38280793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 6686313 - 6686357
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||  |||||||| ||| ||||||    
T  6686313 cattttctttgtcccaaaatataaacaaaaaagataaacttttat 6686357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 17351277 - 17351329
Alignment:
Q  176 ctcattttctttgtcccaaaa-tataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||| | |||| |||||||||||| |||||| ||||    
T  17351277 ctcattttctttgtcccaaaattgtaagcaaaaaagacaaacttttatcctat 17351329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 30086786 - 30086746
Alignment:
Q  182 ttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||| ||||||||||||||||||||| || ||||||    
T  30086786 ttctttgtctcaaaatataagtaaaaaagaccaacttttat 30086746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 41625776 - 41625720
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctatgtatt 232  Q
    |||||||||||| || |||||| |||  |||||||| ||||||||||||||| ||||    
T  41625776 ctcattttctttatctcaaaatgtaatcaaaaaagataaatttttattctatttatt 41625720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 43590193 - 43590149
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||| |||||||||||| |||||| ||||| ||||||    
T  43590193 cattttctttgtaccaaaatataagcaaaaaatacaaacttttat 43590149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 4047159 - 4047108
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  4047159 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttattctat 4047108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 35525493 - 35525544
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  35525493 ctcattttctttgtcccaaaatataagtaaaaaagacaaacttttatcctat 35525544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 30576089 - 30576041
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  30576089 attttctttgtcccaaaatataagcaaaaaagacaaatttttatcctat 30576041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 24510929 - 24510883
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||    
T  24510929 ctcattttctttgtcccaaaatataagttaaaaagaccaatttttat 24510883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 34890439 - 34890393
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||    
T  34890439 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttat 34890393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 7022635 - 7022591
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  7022635 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 7022591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 7858456 - 7858500
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  7858456 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 7858500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 8107884 - 8107837
Alignment:
Q  176 ctcattttctttgtcccaaaatataag-taaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||    
T  8107884 ctcattttctttgtcccaaaatataagcaaaaaaagacaaatttttat 8107837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 13144226 - 13144175
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||| |||||||||||| |||||| ||||    
T  13144226 ctcattttctttgtctcaaaatataagcaaaaaagacaaacttttatcctat 13144175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 24892733 - 24892784
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||| |||||||||||| |||||||||||| |||||| ||||    
T  24892733 ctcattttctttgttccaaaatataagcaaaaaagacaaacttttatcctat 24892784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 36190666 - 36190717
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||||||| | |||||| ||||    
T  36190666 ctcattttctttgtcccaaaatataagcaaaaaagacacacttttatcctat 36190717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 36537974 - 36538025
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||| |||||||||||| |||||| ||||    
T  36537974 ctcattttctttgtctcaaaatataagcaaaaaagacaaacttttatgctat 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 13143659 - 13143705
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  13143659 ctcattttctttgtcccaaaatataagcaaaaaagataaacttttat 13143705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 17713137 - 17713183
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||| |||||||||||||||| || ||||||    
T  17713137 ctcattttctttgtcccaaattataagtaaaaaagaccaacttttat 17713183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 8711772 - 8711817
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||| |||||| |||||||||| ||||||||||||||||||||    
T  8711772 tcattttatttgtctcaaaatataaataaaaaagacaaatttttat 8711817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 15958146 - 15958105
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaattttt 220  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  15958146 attttctttgtcccaaaatataagcaaaaaatacaaattttt 15958105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 7499623 - 7499671
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||| |||| ||||||||||||||||||||||||||| || ||||||||    
T  7499623 atttcctttatcccaaaatataagtaaaaaagacaaacttgtattctat 7499671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 26954636 - 26954592
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||| |||||||||||||||| || ||||||    
T  26954636 cattttctttgtcccaaattataagtaaaaaagaccaaattttat 26954592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 41809065 - 41809017
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||| |||||| ||||||||||| |||||||||||| |||||||||||    
T  41809065 attttttttgtctcaaaatataagcaaaaaagacaaacttttattctat 41809017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 11043973 - 11044024
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||| ||||||||| || |||||| ||||    
T  11043973 ctcattttctttgtctcaaaatataagcaaaaaagaccaacttttatgctat 11044024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 16635355 - 16635406
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||| ||||||||||||| |||||| || |||||| ||||    
T  16635355 ctcattttctttgtcctaaaatataagtaagaaagaccaacttttatgctat 16635406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 16635491 - 16635542
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||| ||||||||||||| |||||| || |||||| ||||    
T  16635491 ctcattttctttgtcctaaaatataagtaagaaagaccaacttttatgctat 16635542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 24612725 - 24612674
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||| ||||||||| || |||||| ||||    
T  24612725 ctcattttctttgtctcaaaatataagcaaaaaagaccaacttttatgctat 24612674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 28348511 - 28348557
Alignment:
Q  180 ttttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  28348511 ttttctttgtcccaaaatataag-aaaaaagacaaacttttatcctat 28348557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 35344282 - 35344333
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||| ||||||||| ||||||||||| ||||||||| ||||||||| ||||    
T  35344282 ctcatattctttgtctcaaaatataagcaaaaaagaccaatttttatgctat 35344333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 29920535 - 29920485
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||| ||||||||| |||||| ||||| |||||| ||||    
T  29920535 tcattttctttgtccctaaatataagcaaaaaacacaaacttttatcctat 29920485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 41086619 - 41086574
Alignment:
Q  178 cattttctttgtcccaaaatataag-taaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||    
T  41086619 cattttctttgtcccaaaatataagcaaaaaaagacaaacttttat 41086574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 2238827 - 2238791
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagac 212  Q
    |||||||||||||||| |||||||||| |||||||||    
T  2238827 ctcattttctttgtcctaaaatataagcaaaaaagac 2238791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 8673298 - 8673342
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||| |||||| ||||||||| || ||||||    
T  8673298 cattttctttgtcccaaattataagcaaaaaagaccaacttttat 8673342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 20051506 - 20051549
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||| |||||||||||| ||||| |||||||||||||    
T  20051506 cattttctttgtaccaaaatataag-aaaaacgacaaatttttat 20051549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 25321828 - 25321780
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||| ||||||||||| ||||||||| || |||||| ||||    
T  25321828 attttctttgtctcaaaatataagcaaaaaagaccaacttttatgctat 25321780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 43216619 - 43216587
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaa 209  Q
    |||||||||||||||||||||||||| ||||||    
T  43216619 tcattttctttgtcccaaaatataagcaaaaaa 43216587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 39078052 - 39078103
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  39078052 ctcattttctttgtcccaaaatataagtaaaaaagacaaacttttatcctat 39078103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 35529568 - 35529617
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  35529568 cattttctttgtcccaaaatataagcaaaaaagacaaacttttattctat 35529617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 16605092 - 16605032
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctatgtattattg 236  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| |||| || |||||    
T  16605092 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatgctatttaatattg 16605032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 41414833 - 41414789
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  41414833 cattttctttgtcccaaaatataagtaaaaaagacaaacttttat 41414789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 17187039 - 17186988
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  17187039 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctat 17186988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 48793883 - 48793832
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  48793883 ctcattttctttgtcccaaaatataagcataaaagacaaacttttattctat 48793832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 55580562 - 55580607
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaattttta 221  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||    
T  55580562 ctcattttctttgtcccaaaatataagcaaaaaagacaaactttta 55580607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 2229175 - 2229219
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  2229175 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 2229219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 14332687 - 14332731
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  14332687 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 14332731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 28669224 - 28669180
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||    
T  28669224 cattttctttgtcccaaaatataagcaaaaaggacaaatttttat 28669180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 42915427 - 42915471
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    |||||||||||||||||||||||| |||||||||||| |||||||    
T  42915427 attttctttgtcccaaaatataagcaaaaaagacaaacttttatt 42915471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 5222508 - 5222457
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||| |||||||||||||||||||| || |||||| ||||    
T  5222508 ctcattttctttgtcctaaaatataagtaaaaaagaccaacttttatactat 5222457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 32012537 - 32012486
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||| |||||||||||| |||||| ||||    
T  32012537 ctcattttctttgtctcaaaatataagcaaaaaagacaaacttttatgctat 32012486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 52712973 - 52713024
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  52712973 ctcatattctttgtctcaaaatataagtaaaaaagaccaatttttatgctat 52713024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 8013327 - 8013281
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||| |||||||||||||||| || ||||||    
T  8013327 ctcattttctttgtcccaaattataagtaaaaaagaccaacttttat 8013281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 37911798 - 37911844
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||| |||||||||||||||| || ||||||    
T  37911798 ctcattttctttgtcccaaattataagtaaaaaagactaaattttat 37911844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 30012161 - 30012112
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||| ||||||||  || |||||||||||    
T  30012161 cattttctttgtcccaaaatataagcaaaaaagatcaacttttattctat 30012112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 21181166 - 21181122
Alignment:
Q  183 tctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||    
T  21181166 tctttgtcccaaattataaataaaaaagacaaatttttatcctat 21181122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 47867807 - 47867851
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||| ||| ||||||    
T  47867807 cattttctttgtcccaaaatataagcaaaaaagaaaaacttttat 47867851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 4058609 - 4058660
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||| ||||||||||| |||||||||| |||||||||||| |||||| ||||    
T  4058609 ctcactttctttgtcctaaaatataagcaaaaaagacaaacttttatcctat 4058660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 12002892 - 12002841
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||| |||||||||||| |||| |||| |||||||||||| |||||||||||    
T  12002892 ctcactttctttgtccctaaatgtaagcaaaaaagacaaacttttattctat 12002841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 35311000 - 35310953
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||    
T  35311000 ctcattttctttgtcttaaaatataagcaaaaaagacaaacttttatt 35310953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 39970199 - 39970148
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||| ||||||||| ||||||||||| ||||||||| ||||||||| ||||    
T  39970199 ctcatattctttgtctcaaaatataagcaaaaaagactaatttttatgctat 39970148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 50768355 - 50768406
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||| ||||||||| || |||||| ||||    
T  50768355 ctcattttctttgtctcaaaatataagcaaaaaagaccaacttttatgctat 50768406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 5483535 - 5483489
Alignment:
Q  177 tcattttcttt-gtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  5483535 tcattttcttttgtctcaaaatgtaagtaaaaaagacaaatttttat 5483489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 29180622 - 29180576
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||| ||||||||| ||||||||||| |||||||||||| ||||||    
T  29180622 ctcatattctttgtctcaaaatataagcaaaaaagacaaacttttat 29180576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 29581628 - 29581590
Alignment:
Q  181 tttctttgtcccaaaatataagtaaaaaagacaaatttt 219  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  29581628 tttctttgtcccaaattataaataaaaaagacaaatttt 29581590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 37788362 - 37788412
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||| || ||||||||||||||||||||| || |||||| ||||    
T  37788362 tcattttctttatctcaaaatataagtaaaaaagaccaacttttatgctat 37788412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 53848381 - 53848427
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||| |||||||||||||| |||||||||||||||| || ||||||    
T  53848381 ctcatcttctttgtcccaaattataagtaaaaaagaccaacttttat 53848427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 19351740 - 19351785
Alignment:
Q  182 ttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||| ||||||||| |||| |||||||||||| |||||||||||    
T  19351740 ttctttatcccaaaatgtaagaaaaaaagacaaacttttattctat 19351785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 47516427 - 47516382
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    |||||||||||||||||| |||||| ||||||||| || |||||||    
T  47516427 cattttctttgtcccaaattataagcaaaaaagaccaacttttatt 47516382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 7654555 - 7654599
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||| ||| |||||||||| |||||||||||| ||||||    
T  7654555 cattttctttatcctaaaatataagcaaaaaagacaaacttttat 7654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 26916253 - 26916297
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||| ||||||||||| |||||||| ||| ||||||    
T  26916253 cattttctttgtctcaaaatataagcaaaaaagataaacttttat 26916297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 46557425 - 46557374
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  46557425 ctcattttctttgtcttaaaatataagtaaaaaagacaaatttttattctat 46557374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 11054533 - 11054454
Alignment:
Q  143 tactccctccgtcccataatgtaagnnnnnnnnctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||| ||||        | ||||||||||||||||||||||||| |||||||||||| ||||||    
T  11054533 tactccctccgtcccataatataagccaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttat 11054454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 14752431 - 14752385
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||    
T  14752431 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttat 14752385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 37042608 - 37042566
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttt 219  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  37042608 tcattttctttgtcccaaaatataaggaaaaaagacaaatttt 37042566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 23910685 - 23910641
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||| |||||||||||||||||| |||||||||||||||||||    
T  23910685 cattttttttgtcccaaaatataagcaaaaaagacaaatttttat 23910641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 7866706 - 7866655
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||| ||||    
T  7866706 ctcattttctttgtcccaaaatataaacaaaaaagacaaacttttatcctat 7866655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 36546435 - 36546518
Alignment:
Q  138 taaactactccctccgtcccataatgtaagnnnnnnnn-ctcattttctttgtcccaaaatataagtaaaaaagacaaattttt 220  Q
    ||||||||||||||||||||||||| ||||         | ||||||||||||||||||||||||| |||||||||||| ||||    
T  36546435 taaactactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaactttt 36546518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 36561880 - 36561797
Alignment:
Q  138 taaactactccctccgtcccataatgtaagnnnnnnnn-ctcattttctttgtcccaaaatataagtaaaaaagacaaattttt 220  Q
    ||||||||||||||||||||||||| ||||         | ||||||||||||||||||||||||| |||||||||||| ||||    
T  36561880 taaactactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaactttt 36561797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 37074860 - 37074910
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||| ||||||||| |||||||||||| |||||| ||||    
T  37074860 tcattttctttgtcccgaaatataagcaaaaaagacaaacttttatcctat 37074910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 50730016 - 50730058
Alignment:
Q  185 tttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  50730016 tttgtcccaaaatataagtaaaaaagataaatttttatcctat 50730058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 50782836 - 50782794
Alignment:
Q  185 tttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  50782836 tttgtcccaaaatataagtaaaaaagataaatttttatcctat 50782794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 54465114 - 54465068
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||| |||||||||| |||||||| ||||||||||    
T  54465114 ctcattttctttgtcctaaaatataagcaaaaaagataaatttttat 54465068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 22479257 - 22479212
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||    
T  22479257 tcattttctttgtcccaaattataagcaaaaaagacaaacttttat 22479212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 47867132 - 47867087
Alignment:
Q  182 ttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||    
T  47867132 ttctttatcccaaaatgtaagtaaaaaagacaaatttttatcctat 47867087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 6752571 - 6752619
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||| ||||    
T  6752571 attttctttgtcctaaaatttaagtaaaaaagacaaacttttatcctat 6752619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 23311783 - 23311739
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||||    
T  23311783 cattttctttgtcccaaaatataagcaaaaaagtcaaacttttat 23311739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 30189503 - 30189547
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||||||| | ||||||||| ||||||||||    
T  30189503 cattttctttgtcccaaaatattaataaaaaagataaatttttat 30189547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 32322445 - 32322409
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagac 212  Q
    ||||||||||||||| |||||||||||||||||||||    
T  32322445 ctcattttctttgtctcaaaatataagtaaaaaagac 32322409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 33974782 - 33974738
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaattttt 220  Q
    ||||||||||||||| ||||||||||| |||||||||||| ||||    
T  33974782 ctcattttctttgtctcaaaatataagcaaaaaagacaaactttt 33974738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 47864125 - 47864161
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaa 215  Q
    ||||||||||||||||||||||| |||||||||||||    
T  47864125 attttctttgtcccaaaatataaataaaaaagacaaa 47864161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 51311587 - 51311623
Alignment:
Q  191 ccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||||||||||||||||||| ||||    
T  51311587 ccaaaatataagtaaaaaagacaaatttttatcctat 51311623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 2927189 - 2927236
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||    
T  2927189 ctcattttctttgtcttaaaatataagcaaaaaagacaaacttttatt 2927236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 6074983 - 6075022
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaa 215  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  6074983 ctcattttcattgtcccaaaatataagcaaaaaagacaaa 6075022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 19463975 - 19464026
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||  |||||||||||||| | |||||||||| |||||||||||    
T  19463975 ctcattttcttcatcccaaaatataagcagaaaagacaaacttttattctat 19464026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 29676931 - 29676896
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaa 214  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29676931 attttctttgtcccaaattataagtaaaaaagacaa 29676896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 1335024 - 1335070
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||| ||||||||| ||||||||||| ||||||||| |||||||||    
T  1335024 ctcatattctttgtctcaaaatataagcaaaaaagaccaatttttat 1335070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 20847494 - 20847460
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaaga 211  Q
    ||||||||||||||||||| |||||||||||||||    
T  20847494 tcattttctttgtcccaaattataagtaaaaaaga 20847460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 41476551 - 41476506
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  41476551 ctcattttgtttgtcccaaaatataa-taaaaaagacaaacttttat 41476506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 53270133 - 53270183
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||| | |||||||||||| |||||| | |||||||||||||||    
T  53270133 tcattttctttattccaaaatataagcaaaaaaaataaatttttattctat 53270183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 6437980 - 6438013
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaa 209  Q
    ||||||||||||||||||||||||||| ||||||    
T  6437980 ctcattttctttgtcccaaaatataagcaaaaaa 6438013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 46580451 - 46580496
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||| ||||||||| ||||||||||||||||||||| || ||||||    
T  46580451 tcatattctttgtctcaaaatataagtaaaaaagaccaacttttat 46580496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 2994620 - 2994576
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||| |||||| ||||| |||||| ||||||    
T  2994620 cattttctttgtcccaaattataagaaaaaatgacaaacttttat 2994576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 16739358 - 16739310
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||| ||||||||||| ||||||||| || |||||| ||||    
T  16739358 attttctttgtctcaaaatataagcaaaaaagaccaacttttatgctat 16739310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 51255105 - 51255137
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaaga 211  Q
    |||||||||||| ||||||||||||||||||||    
T  51255105 attttctttgtctcaaaatataagtaaaaaaga 51255137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 44149096 - 44149045
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  44149096 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttattctat 44149045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 15959904 - 15959858
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  15959904 ctcattttctttgtcccaaaatataagcaaaaaagacaaatttttat 15959858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 4672796 - 4672847
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  4672796 ctcattttctttgtcccaaaatataagcaaaaaagataaatttttatcctat 4672847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 7468217 - 7468166
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  7468217 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctat 7468166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 28017008 - 28016957
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  28017008 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctat 28016957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 47600304 - 47600253
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  47600304 ctcattttctttgtccgaaagtataagtaaaaaagacaaatttttatcctat 47600253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 6786734 - 6786780
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||    
T  6786734 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttat 6786780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 2125967 - 2126011
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  2125967 cattttctttgtcctaaaatataagtaaaaaagacaaacttttat 2126011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 6787255 - 6787195
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctatgtattattg 236  Q
    |||||||||||| |||||||||||||| |||||||||||| |||||| |||| || |||||    
T  6787255 ctcattttctttatcccaaaatataagcaaaaaagacaaacttttatcctatttaatattg 6787195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 12449198 - 12449154
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  12449198 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 12449154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 32624237 - 32624193
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  32624237 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 32624193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 39555817 - 39555773
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  39555817 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 39555773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 1820312 - 1820363
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||| ||| ||||||||||||||||||||||| |||||| ||||    
T  1820312 ctcattttctttatcctaaaatataagtaaaaaagacaaacttttatcctat 1820363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 26907336 - 26907285
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||||||||||||| || |||||| ||||    
T  26907336 ctcattttctttgtctcaaaatataagtaaaaaagaccaacttttatgctat 26907285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 33431458 - 33431501
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaattttt 220  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  33431458 tcattttctttgttccaaaatataagtaaaaaagacaaaatttt 33431501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 47026392 - 47026442
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||| | ||||||||||||||||||||||| |||||| ||||    
T  47026392 tcattttctttgttctaaaatataagtaaaaaagacaaacttttatcctat 47026442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 42966044 - 42965999
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    |||||| |||||||||||||| |||||||||||||||| |||||||    
T  42966044 cattttatttgtcccaaaatacaagtaaaaaagacaaacttttatt 42965999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 35691321 - 35691365
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||    
T  35691321 cattttctttgtaccaaaatataagtaaaaaaaataaatttttat 35691365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 43667531 - 43667487
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||    
T  43667531 cattttctttgtctcaaaatataagcaaaaaagacaaacttttat 43667487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 298931 - 298880
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| |||||| |||| |||||||||||| |||||| ||||    
T  298931 ctcattttctttgtctcaaaatgtaagcaaaaaagacaaagttttatcctat 298880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 6785353 - 6785404
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||| |||||||| ||| |||||| ||||    
T  6785353 ctcattttctttgtcacaaaatataagcaaaaaagataaacttttatcctat 6785404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 24728891 - 24728840
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||| |||| | | |||||||||||||||    
T  24728891 ctcattttctttgtctcaaaatataagaaaaataaataaatttttattctat 24728840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 25990661 - 25990712
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||| ||||||||| ||||||||||| ||||||||| ||||||||| ||||    
T  25990661 ctcatattctttgtctcaaaatataagcaaaaaagaccaatttttatgctat 25990712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 28916762 - 28916711
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||| || |||||| |||||||||||||||||||||||| |||||| ||||    
T  28916762 ctcatattttttgtctcaaaatataagtaaaaaagacaaacttttatgctat 28916711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 29488661 - 29488712
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||||||||| ||||||||| || |||||| ||||    
T  29488661 ctcattttctttgtctcaaaatataagcaaaaaagaccaacttttatgctat 29488712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 40219970 - 40220021
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||| ||||||||| ||||||||||| ||||||||| ||||||||| ||||    
T  40219970 ctcatattctttgtctcaaaatataagcaaaaaagactaatttttatgctat 40220021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 5950355 - 5950401
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||||||| | || ||| |||||||||||||||||||    
T  5950355 ctcattttctttgtcccagattacaagcaaaaaagacaaatttttat 5950401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 15285717 - 15285763
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||| ||||||||| ||||||||||| ||||||||| |||||||||    
T  15285717 ctcatattctttgtctcaaaatataagcaaaaaagaccaatttttat 15285763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 51339142 - 51339096
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttatt 223  Q
    |||||||||||||| |||| |||||||||||||||| || |||||||    
T  51339142 tcattttctttgtcgcaaattataagtaaaaaagactaacttttatt 51339096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 16854032 - 16854065
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaa 209  Q
    ||||||||||||||||||||||||||| ||||||    
T  16854032 ctcattttctttgtcccaaaatataagcaaaaaa 16854065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 32983390 - 32983357
Alignment:
Q  189 tcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||||| |||||||||||||||||||    
T  32983390 tcccaaaatataagcaaaaaagacaaatttttat 32983357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 46542878 - 46542911
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaa 209  Q
    ||||||||||||||||||||||||||| ||||||    
T  46542878 ctcattttctttgtcccaaaatataagcaaaaaa 46542911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 1801005 - 1800965
Alignment:
Q  54 aagattaaaatcgtgccaacgaattgtttgagacggccctg 94  Q
    ||||||||||| | ||||||||||||||| |||||||||||    
T  1801005 aagattaaaatggggccaacgaattgtttaagacggccctg 1800965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 3875276 - 3875236
Alignment:
Q  187 tgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  3875276 tgtcccataatataagcaaaaaagacaaatttttatcctat 3875236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 24190401 - 24190444
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||| |||||||||||| |||||||||||| ||||||    
T  24190401 cattttctttgtaccaaaatataag-aaaaaagacaaacttttat 24190444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 157694 - 157742
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||    
T  157694 attttctttgtcccaaaatataagcaaaaaagacaaacttttattctat 157742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 910 - 960
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  910 tcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctat 960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 8870 - 8920
Alignment:
Q  177 tcattttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  8870 tcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctat 8920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 77887 - 77931
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  77887 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 77931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 3095952 - 3095908
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  3095952 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 3095908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 21542348 - 21542392
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  21542348 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 21542392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 34177872 - 34177828
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||| ||||||||||||||||||| ||||| ||||||    
T  34177872 cattttctttgtaccaaaatataagtaaaaaacacaaacttttat 34177828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 35129286 - 35129242
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||    
T  35129286 cattttctttgtcccaaaatacaagcaaaaaagacaaacttttat 35129242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 1576919 - 1576870
Alignment:
Q  176 ctcattttctttgtcccaaaatataagtaaaaaagacaaatttttattcta 226  Q
    |||||||||||| ||| |||||||||| |||||||| ||||||||||||||    
T  1576919 ctcattttctttatcctaaaatataag-aaaaaagataaatttttattcta 1576870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 2851479 - 2851525
Alignment:
Q  181 tttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    ||||||||||||||| ||||| | |||||||||||||||||| ||||    
T  2851479 tttctttgtcccaaattataaatgaaaaagacaaatttttatcctat 2851525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 30949051 - 30949099
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttattctat 227  Q
    |||||||||||| ||||||||||| ||||||||| || |||||| ||||    
T  30949051 attttctttgtctcaaaatataagcaaaaaagactaacttttatgctat 30949099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 9979 - 10019
Alignment:
Q  182 ttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  9979 ttctttgtcccaaaatataagtaaaaaaggcaaacttttat 10019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 154792 - 154835
Alignment:
Q  179 attttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||    
T  154792 attttctttgtctcaaaatataagtaaaaaagataaacttttat 154835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 3655 - 3615
Alignment:
Q  182 ttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    ||||||||||||||||||||| |||||||| ||| ||||||    
T  3655 ttctttgtcccaaaatataagcaaaaaagataaacttttat 3615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 804 - 760
Alignment:
Q  178 cattttctttgtcccaaaatataagtaaaaaagacaaatttttat 222  Q
    |||||||||||| |||||||||||| |||||| ||||| ||||||    
T  804 cattttctttgtaccaaaatataagcaaaaaacacaaacttttat 760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5262 times since January 2019
Visitors: 4847