View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0728_high_6 (Length: 414)
Name: NF0728_high_6
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 10783983 - 10784364
Alignment:
| Q |
11 |
cagagagcagatatatcaaaggccgaaaatgaagaaactttggccaagctttcccaatctgagaaggcacaaactgaatggaaaggtagagtaagcaggc |
110 |
Q |
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| T |
10783983 |
cagagagcagatatatcaaaggccgaaaatgaagaaactttggccaagctttcccaatctgagaaggcacaaactgaatggaaaggtagagtaagcaggc |
10784082 |
T |
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| Q |
111 |
ttgaggaagacaatgccagattgaggcgtgctgttgagcagagtatgacacggttaaatagaatgtcagtggattcagatcatctcgttgacaggttaac |
210 |
Q |
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| T |
10784083 |
ttgaggaagacaatgccagattgaggcgtgctgttgagcagagtatgacacggttaaatagaatgtcagtggattcagatcatctcgttgacaggttaac |
10784182 |
T |
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| Q |
211 |
ctgcttgtgctcttagtatatttttcttgcgaattctgcttgaccatgcgatttctgctaaacttatgaaatcctagacatgcaactatgtttattactt |
310 |
Q |
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| T |
10784183 |
ctgcttgtgctcttagtatatttttcttgcgaattctgcttgaccatgcgatttctgataaacttatgaaatcctagacgtgcaactatgtttattactt |
10784282 |
T |
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| Q |
311 |
ttcccnnnnnnnaaaaggataatcattgcaatcttgtaaatatgaatttgtgctgaatttagacttgtgataatttgatgat |
392 |
Q |
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| T |
10784283 |
ttccctttttttaaaaggataatcattgcaatcttgtaaatatgaatttgtgctgaatttagacttgtgataatttgatgat |
10784364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 30037555 - 30037383
Alignment:
| Q |
35 |
gaaaatgaagaaactttggccaagctttcccaatctgagaaggcacaaactgaatggaaaggtagagtaagcaggcttgaggaagacaatgccagattga |
134 |
Q |
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||||| ||||||| ||| ||||||||||| ||||||||||| | ||| | ||||||| | |||||||||||| |||||||||||| ||||| | ||||| |
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| T |
30037555 |
gaaaaagaagaaattttagccaagctttctcaatctgagaaagtacagtcagaatggagaagtagagtaagcaagcttgaggaagaaaatgctaaattga |
30037456 |
T |
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| Q |
135 |
ggcgtgctgttgagcagagtatgacacggttaaatagaatgtcagtggattcagatcatctcgttgacaggtt |
207 |
Q |
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|||| ||| |||| || |||||||||||| ||||||||||||| |||||||| ||| ||| ||||||||||| |
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| T |
30037455 |
ggcgagctcttgaacaaagtatgacacggctaaatagaatgtcggtggattctgattttcttgttgacaggtt |
30037383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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