View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0728_low_1 (Length: 491)
Name: NF0728_low_1
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 2 - 478
Target Start/End: Complemental strand, 6217098 - 6216622
Alignment:
| Q |
2 |
catcacttacaataccacgggaaggaggagtggcgatttgagactgctgatatttcaagatagtccaatcgaagacataatcaaactggaatcctggagc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6217098 |
catcacttacaataccacgggaaggaggagtggcgatttgagactgctgatatttcaagatagtccaatcgaagacgtaatcaaactggaatcctggagc |
6216999 |
T |
|
| Q |
102 |
aacaaggcaagaacaaagaaaaaatgacattaaaacacatcccatctagaacctaaactatggttttcaaggactatagtgcatcattccaaaaataaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6216998 |
aacaaggcaagaacaaagaaaaaatgacattaaaacacatcccatctagaacctaaactatggttttcaaggactatagtgcatcattccaaaaataaaa |
6216899 |
T |
|
| Q |
202 |
tatacataggaaaacaaggcccaaaccttcacggatgaataggtcacgcaaaagtcttttcagataagcataatctggcttatcatcaaacctcagtgac |
301 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6216898 |
tataaataggaaaacaaggcccaaaccttcacggatgaataggtcacgcaaaagtcttttcagataagcataatctggcttatcatcaaacctcagtgac |
6216799 |
T |
|
| Q |
302 |
cggcaataatggaagtatgaagcaaattctgagggatagccacgacagagagactagcaaagaagcaacccacaatcaacaatggttttaaaagacataa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6216798 |
cggcaataatggaagtatgaagcaaattctgagggatagccacgacagagagactagcaaagaagcaacccacaatcaacaatgattttaaaagacataa |
6216699 |
T |
|
| Q |
402 |
tggacatacattatatgaaatatgttactgttttatcactccaatcatacctcaatagatgtagaaactttcttctc |
478 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6216698 |
tggacatacattatatgaaataagttactgttttatcactccaatcatacctcaatagatgtagaaactttcttctc |
6216622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 191 - 374
Target Start/End: Original strand, 42738216 - 42738402
Alignment:
| Q |
191 |
caaaaataaaatatacataggaaaacaa---ggcccaaaccttcacggatgaataggtcacgcaaaagtcttttcagataagcataatctggcttatcat |
287 |
Q |
| |
|
||||| ||||||||| ||| |||||||| ||| ||||||||||| ||||| ||||| || || || ||||||||||| ||||||||||| ||||||| |
|
|
| T |
42738216 |
caaaagtaaaatataaataagaaaacaaagaggcttaaaccttcacgaatgaaaaggtcgcgaaacagccttttcagatatgcataatctggtttatcat |
42738315 |
T |
|
| Q |
288 |
caaacctcagtgaccggcaataatggaagtatgaagcaaattctgagggatagccacgacagagagactagcaaagaagcaacccac |
374 |
Q |
| |
|
|||||| || |||||| || ||||||||||| ||||| ||||||||||| ||||||||||| | ||||| |||| |||||| |||| |
|
|
| T |
42738316 |
caaaccgcaatgaccgacagtaatggaagtacgaagcgaattctgaggggtagccacgacacaaggactaacaaaaaagcaagccac |
42738402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 17510586 - 17510477
Alignment:
| Q |
223 |
caaaccttcacggatgaataggtcacgcaaaagtcttttcagataagcataatctggcttatcatcaaacctcagtgaccggcaataatggaagtatgaa |
322 |
Q |
| |
|
|||||||||||| || || |||||||| || | |||||| || ||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
17510586 |
caaaccttcacgaataaacaggtcacgaaatattcttttgaggtaagcataatctggcctatcatcaaaccttaatgaccggcaataatggaagtatgat |
17510487 |
T |
|
| Q |
323 |
gcaaattctg |
332 |
Q |
| |
|
||||| |||| |
|
|
| T |
17510486 |
gcaaactctg |
17510477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 42738038 - 42738138
Alignment:
| Q |
5 |
cacttacaataccacgggaaggaggagtggcgatttgagactgctgatatttcaagatagtccaatcgaagacataatcaaactggaatcctggagcaac |
104 |
Q |
| |
|
|||||||||| |||| | || ||||||||| |||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42738038 |
cacttacaatggcacgtgcagaaggagtggcaatttgagattgctgatacttcaaaatggtccaatcgaagacataatcaaactggaatcctgcagcaac |
42738137 |
T |
|
| Q |
105 |
a |
105 |
Q |
| |
|
| |
|
|
| T |
42738138 |
a |
42738138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 52358420 - 52358527
Alignment:
| Q |
223 |
caaaccttcacggatgaataggtcacgcaaaagtcttttcagataagcataatctggcttatcatcaaacctcagtgaccggcaataatggaagtatgaa |
322 |
Q |
| |
|
||||||||||||||| || ||||| || || | ||||| |||||||||||||||||||||||||||||||| | ||| || || |||||||||||||| |
|
|
| T |
52358420 |
caaaccttcacggataaacaggtcgcggaatatccttttgagataagcataatctggcttatcatcaaaccttaatgagcgacagtaatggaagtatgat |
52358519 |
T |
|
| Q |
323 |
gcaaattc |
330 |
Q |
| |
|
|||||||| |
|
|
| T |
52358520 |
gcaaattc |
52358527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 52358231 - 52358282
Alignment:
| Q |
46 |
tgctgatatttcaagatagtccaatcgaagacataatcaaactggaatcctg |
97 |
Q |
| |
|
|||||||| |||||||| ||||| || || |||||||||||||||||||||| |
|
|
| T |
52358231 |
tgctgatacttcaagatggtccagtcaaacacataatcaaactggaatcctg |
52358282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 33624282 - 33624387
Alignment:
| Q |
225 |
aaccttcacggatgaataggtcacgcaaaagtcttttcagataagcataatctggcttatcatcaaacctcagtgaccggcaataatggaagtatgaagc |
324 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| || ||||| | |||||| |||||||| ||||||| || || ||||| |||||||||||||| | |
|
|
| T |
33624282 |
aaccttctcggatgaataggtcacgaaagagtctcttgagatatgaataatcaggcttatcttcaaaccgcaacgatcggcagtaatggaagtatgatgt |
33624381 |
T |
|
| Q |
325 |
aaattc |
330 |
Q |
| |
|
|||||| |
|
|
| T |
33624382 |
aaattc |
33624387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 321
Target Start/End: Complemental strand, 15796308 - 15796212
Alignment:
| Q |
225 |
aaccttcacggatgaataggtcacgcaaaagtcttttcagataagcataatctggcttatcatcaaacctcagtgaccggcaataatggaagtatga |
321 |
Q |
| |
|
||||||| || ||||||||||| || || ||||| || ||||| | |||||| || ||||| ||||||| || ||| |||||||| ||||| ||||| |
|
|
| T |
15796308 |
aaccttctcgaatgaataggtcccggaagagtctcttaagatatgaataatcgggtttatcttcaaaccgcaatgatcggcaatagtggaaatatga |
15796212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2823 times since January 2019
Visitors: 4801