View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0728_low_10 (Length: 350)
Name: NF0728_low_10
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 55 - 342
Target Start/End: Complemental strand, 38707857 - 38707571
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38707857 |
ttaccaacactatttggaccaaggaataggaagggaccagttggtttttgaggtcttcttaaaccaactctc-gatctcactacagccccagcaaaaact |
38707759 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707758 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtac |
38707659 |
T |
|
| Q |
255 |
cggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatctgtgct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38707658 |
cggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgct |
38707571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 55 - 342
Target Start/End: Complemental strand, 10046065 - 10045779
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||| || |||| ||||| || || |||||||||||||| | | || |
|
|
| T |
10046065 |
ttaccgacaccagttggaccaaggaataggaaggaaccagttggttgttgtggtcttcctagaccagctctc-gaccttactacagccccagcgacagct |
10045967 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||| |
|
|
| T |
10045966 |
ttaactgcttggtcttgtcccacaactctagtatgcaatctgtctccaagtccaaccaacctttctttatcattttggcctaaacgagtcactggtatac |
10045867 |
T |
|
| Q |
255 |
cggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatctgtgct |
342 |
Q |
| |
|
||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||| |
|
|
| T |
10045866 |
cggtccatcggctaacaacctcagcaatttgatctggtccaacagtttctgtcagcatcaagttctcacctttgttcccatcagtgct |
10045779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 55 - 342
Target Start/End: Complemental strand, 45467918 - 45467632
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||| ||||||||||||||| ||||||| ||||||| |||| ||||||| ||||||| |||||| | | |
|
|
| T |
45467918 |
ttaccaacaccagtcggaccaaggaataagaaggaaccagttggttgttggggtcttcctaaaccagctctt-gatctcaatacagcctcagcaacagca |
45467820 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtac |
254 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||| |||| |||||||| | || | |||||| ||| ||| |
|
|
| T |
45467819 |
ttaaccgcttggtcttgtcccacgactctagtgtgcagtctgtcaccaagtccaaccaaccttgctttctcattttggccgagcctagtcactggtatac |
45467720 |
T |
|
| Q |
255 |
cggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatctgtgct |
342 |
Q |
| |
|
| ||||||||||||||||||| ||||| ||||| |||||||| ||||| |||| ||| ||||| ||||| |||| ||||| ||||| |
|
|
| T |
45467719 |
cagtccatcggctaacaacctcggctatttggtccggtccaactgtttccgtcaacattaagttctcatccgtgttcccatcagtgct |
45467632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 229
Target Start/End: Original strand, 43064743 - 43064913
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||| ||||||| ||||||| |||||| ||| |
|
|
| T |
43064743 |
ttaccaacaccaattggaccaaggaataggaagggacatgttggttgttgagctcttcctaaaccagctct-tgatctcaatacagcctcagcaagaaca |
43064841 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattt |
229 |
Q |
| |
|
|||| || ||||| |||||| ||||| ||||||||| | |||| |||||||| ||| |||||||| |||||| |
|
|
| T |
43064842 |
ttaattgtttggtattgtcctgcaact---ctgtgcaatctatcacaaagtccaatcaatctttctttctcattt |
43064913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 316
Target Start/End: Original strand, 42449969 - 42450229
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| ||||||||||||| | |||| ||||| ||||| | |
|
|
| T |
42449969 |
ttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactctccg-cctcaatacagtgttagcaacggca |
42450067 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcact-agacgagtcaccggtgta |
253 |
Q |
| |
|
|| ||||| || ||||||||||| ||||| |||| || ||||||||||||||| ||||||||||| ||||||| |||| || || | ||| ||| || |
|
|
| T |
42450068 |
tttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacctttctttctcatttt-cactaagtcgggacactggtata |
42450166 |
T |
|
| Q |
254 |
ccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaag |
316 |
Q |
| |
|
|| ||| || ||||||||||| | |||| |||||||| ||||||||| ||||| ||||||| |
|
|
| T |
42450167 |
cccgtcaataggctaacaaccaaacctattaggtctggttcaacagtttttgtcaacatcaag |
42450229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 742713 - 742887
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| | ||||| ||||| | || | |||||| ||||| | |
|
|
| T |
742713 |
ttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctgaaccagctctc-caccttaatacagcgttagcaacgtca |
742811 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcatttt |
230 |
Q |
| |
|
|| |||||||| |||||||||||||||||| | ||||| ||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
742812 |
tttactgcttgatcttgtcccacaactctattatgcaacctgtcaccaattccaagaaacctttctttctcatttt |
742887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3820 times since January 2019
Visitors: 4822