View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0728_low_11 (Length: 346)
Name: NF0728_low_11
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_11 |
 | |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 30037843 - 30037618
Alignment:
| Q |
22 |
catcatcaacattatcaatgaacgaaggaagaggctgaatgtgtaatcgacgattaagaagaagaaacaaattgagagtagaaggaacagagaagagaga |
121 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30037843 |
catcattaacattgtcaatgaacgaaggaagaggctgaatgtgtaatcgacgatgaagaagaagaaacaaattgcgagtagaaggaacagagaagagaga |
30037744 |
T |
|
| Q |
122 |
cgagtaccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagttt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30037743 |
cgagtaccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagttt |
30037644 |
T |
|
| Q |
222 |
taccagaagaacgattcttgtctctt |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
30037643 |
taccagaagaacgattcttgtctctt |
30037618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 30153430 - 30153207
Alignment:
| Q |
21 |
acatcatcaacattatcaatgaacgaaggaagaggctgaatgtgtaatcgacgattaagaagaagaaacaaattgagagtagaaggaacagagaagagag |
120 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30153430 |
acatcatcaacattgtgaatgaacgaaggaagaggctgaatgtgtaatcgacgat---gaagaagaaacaaattgcgagtagaaggaacagagaagagag |
30153334 |
T |
|
| Q |
121 |
acgagtaccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagtt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30153333 |
acgagtaccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagtt |
30153234 |
T |
|
| Q |
221 |
ttaccagaagaacgattcttgtctctt |
247 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
30153233 |
tttccagaagaacgattcttgtctctt |
30153207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 30040135 - 30039948
Alignment:
| Q |
22 |
catcatcaacattatcaatgaacgaaggaagaggctgaatgtgtaatcgacgattaagaagaagaaacaaattgagagtagaaggaacagagaagagaga |
121 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30040135 |
catcattaacattgtcaatgaacgaaggaagaggctgaatgtgtaatcgacgat---gaagaagaaacaaattgagagtagaaggaacagagaagagaga |
30040039 |
T |
|
| Q |
122 |
cgagtaccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttgg |
212 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||| ||||||| |
|
|
| T |
30040038 |
cgaataccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagcgtaaatgaattttcgatttgg |
30039948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 30148462 - 30148410
Alignment:
| Q |
22 |
catcatcaacattatcaatgaacgaaggaagaggctgaatgtgtaatcgacga |
74 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30148462 |
catcatcaacattattaatgaacgaaggaagtggctgaatgtgtaatcgacga |
30148410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 30148326 - 30148268
Alignment:
| Q |
154 |
tgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttgg |
212 |
Q |
| |
|
||||||| ||||||||||| |||||| |||||||||||||| | | || |||||||||| |
|
|
| T |
30148326 |
tgcaacgattgtgaatgccatttctaaacactgacagtgtaaatgaatgttggatttgg |
30148268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 29950983 - 29951019
Alignment:
| Q |
38 |
aatgaacgaaggaagaggctgaatgtgtaatcgacga |
74 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
29950983 |
aatgaacaaaggaagaggctgaatgtgtaaacgacga |
29951019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 44939 - 45126
Alignment:
| Q |
22 |
catcatcaacattatcaatgaacgaaggaagaggctgaatgtgtaatcgacgattaagaagaagaaacaaattgagagtagaaggaacagagaagagaga |
121 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44939 |
catcattaacattgtcaatgaacgaaggaagaggctgaatgtgtaatcgacgat---gaagaagaaacaaattgagagtagaaggaacagagaagagaga |
45035 |
T |
|
| Q |
122 |
cgagtaccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttgg |
212 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||| | | ||||| ||||||| |
|
|
| T |
45036 |
cgaataccttaacattgataactgagcttggatgcaacgattgtgaatgccgtttctaaacactgacagcgtaaatgaattttcgatttgg |
45126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4592 times since January 2019
Visitors: 4836