View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0728_low_16 (Length: 310)
Name: NF0728_low_16
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_16 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 55 - 310
Target Start/End: Original strand, 18622117 - 18622372
Alignment:
| Q |
55 |
tatatgtcctagtgtcaggggggcatcgaagctcttccattctctgcaacaacaaactcacttcccgtatgcgtccatggtttccatacaagtgaatcat |
154 |
Q |
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| T |
18622117 |
tatatgtcctagtgtcaggggggcatcgaagctcttccattctctgcaacaacaaactcacttcccgtatgcgtccatggtttccatacaagtgaatcat |
18622216 |
T |
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| Q |
155 |
cgtattaaacgtcaccgtagtcggcgctacaccttgtttgatcatcttagcaaaaatttcatacactgcttgaatttgaccggccttcccatatatgtca |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18622217 |
cgtattaaacgtcaccgtagtcggcgctacaccttgtttgatcatcttagcaaaaatttcatacactgcttgaatttgaccggccttcccatatatgtca |
18622316 |
T |
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| Q |
255 |
attaaggtattatatgtatgtgagtttaaacaaacattgacatgtgatacctcatt |
310 |
Q |
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| T |
18622317 |
attaaggtattatacgtatgtgagtttaaacaaacattgacatgtgatacctcatt |
18622372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 55 - 310
Target Start/End: Complemental strand, 15096519 - 15096264
Alignment:
| Q |
55 |
tatatgtcctagtgtcaggggggcatcgaagctcttccattctctgcaacaacaaactcacttcccgtatgcgtccatggtttccatacaagtgaatcat |
154 |
Q |
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| T |
15096519 |
tatatgtcctagtgtcaggggggcatcgaagctcttccattctctgcaacaacaaactcacttcccgtatgcgtccatggtttccatacaagtgaatcat |
15096420 |
T |
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| Q |
155 |
cgtattaaacgtcaccgtagtcggcgctacaccttgtttgatcatcttagcaaaaatttcatacactgcttgaatttgaccggccttcccatatatgtca |
254 |
Q |
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| T |
15096419 |
cgtattaaacgtcaccgtagtcggcgctacaccttgtttgatcatcttagcaaaaatttcatacactgcttgaatttgaccggccttcccatatatgtca |
15096320 |
T |
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| Q |
255 |
attaaggtattatatgtatgtgagtttaaacaaacattgacatgtgatacctcatt |
310 |
Q |
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| T |
15096319 |
attaaggtattatacgtatgtgagtttaaacaaacattgacatgtgatacctcatt |
15096264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 55 - 310
Target Start/End: Complemental strand, 15107762 - 15107507
Alignment:
| Q |
55 |
tatatgtcctagtgtcaggggggcatcgaagctcttccattctctgcaacaacaaactcacttcccgtatgcgtccatggtttccatacaagtgaatcat |
154 |
Q |
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|||||||||| ||||| || |||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
15107762 |
tatatgtccttgtgtcgggtaggcatcgaagctcttccattcttttcaacaacgaacttacttcccgtatgcgtccatgatttccatacaagtgaatcat |
15107663 |
T |
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| Q |
155 |
cgtattaaacgtcaccgtagtcggcgctacaccttgtttgatcatcttagcaaaaatttcatacactgcttgaatttgaccggccttcccatatatgtca |
254 |
Q |
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||||||||||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
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| T |
15107662 |
tgtattaaacgtcaccgtagtcagcactacaccttgtttaatcatcctagcaaaaatttcatacaccactcgaatttgaccggccttcccatatgtgtca |
15107563 |
T |
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| Q |
255 |
attaaggtattatatgtatgtgagtttaaacaaacattgacatgtgatacctcatt |
310 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15107562 |
atcaaggtattatatgtatgtgagtttaaacagacattgacatgtgatacctcatt |
15107507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 40361832 - 40361749
Alignment:
| Q |
126 |
cgtccatggtttccatacaagtgaatcatcgtattaaacgtcaccgtagtcggcgctacaccttgtttgatcatcttagcaaaa |
209 |
Q |
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||||||||||||||| | | |||||||||||||| || |||||||| || |||| || |||||||| | ||||||||||||| |
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| T |
40361832 |
cgtccatggtttccacaaatatgaatcatcgtattgaatgtcaccgtggtaggcggtatgccttgtttaagcatcttagcaaaa |
40361749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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