View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0728_low_21 (Length: 287)
Name: NF0728_low_21
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 57 - 235
Target Start/End: Original strand, 34556243 - 34556421
Alignment:
| Q |
57 |
acatcatcattatgattatccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatact |
156 |
Q |
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| T |
34556243 |
acatcatcattatgatcatccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatact |
34556342 |
T |
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| Q |
157 |
catcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcttttacttcc |
235 |
Q |
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| T |
34556343 |
catcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctccaaattgaaccctcctttgcttcc |
34556421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 57 - 235
Target Start/End: Original strand, 34547750 - 34547928
Alignment:
| Q |
57 |
acatcatcattatgattatccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatact |
156 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |
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| T |
34547750 |
acatcatcattatgatcatccattaacttccaagtaccatcagattgttgaaccatacccttattctcaactaccctccaattctcaggaatgtgatatt |
34547849 |
T |
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| Q |
157 |
catcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcttttacttcc |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34547850 |
catcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttacttcc |
34547928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 4674379 - 4674434
Alignment:
| Q |
81 |
agcttccaagtaccatcagattgttgaaccatacccttattctccactaccctcca |
136 |
Q |
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|||||||| | |||||| ||||||||||||||||||||||||| || |||||||| |
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| T |
4674379 |
agcttccatgaaccatctaattgttgaaccatacccttattctctacaaccctcca |
4674434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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