View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0728_low_22 (Length: 267)

Name: NF0728_low_22
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0728_low_22
NF0728_low_22
[»] chr6 (20 HSPs)
chr6 (45-239)||(30912485-30912679)
chr6 (182-239)||(7223518-7223575)
chr6 (182-239)||(6943533-6943590)
chr6 (183-239)||(7918454-7918510)
chr6 (183-239)||(15528183-15528239)
chr6 (183-239)||(26053369-26053425)
chr6 (183-239)||(26073422-26073478)
chr6 (182-239)||(17543813-17543870)
chr6 (186-242)||(2912317-2912373)
chr6 (182-239)||(5422821-5422878)
chr6 (182-231)||(17103201-17103250)
chr6 (190-234)||(8545043-8545087)
chr6 (183-239)||(17250057-17250113)
chr6 (50-89)||(30900314-30900353)
chr6 (181-239)||(23897809-23897867)
chr6 (182-239)||(27233350-27233407)
chr6 (182-233)||(10958266-10958317)
chr6 (185-239)||(3574005-3574059)
chr6 (182-239)||(10509096-10509153)
chr6 (181-242)||(11327641-11327702)
[»] chr5 (14 HSPs)
chr5 (184-242)||(23172502-23172560)
chr5 (182-239)||(18051603-18051660)
chr5 (182-239)||(21059228-21059285)
chr5 (183-239)||(43234868-43234924)
chr5 (185-239)||(19042462-19042516)
chr5 (183-237)||(38158329-38158383)
chr5 (182-239)||(22645792-22645849)
chr5 (183-239)||(20923718-20923774)
chr5 (191-242)||(27340256-27340307)
chr5 (184-239)||(18843716-18843771)
chr5 (185-239)||(20320926-20320980)
chr5 (182-234)||(24647938-24647990)
chr5 (181-239)||(19578940-19578998)
chr5 (187-239)||(24106645-24106697)
[»] chr4 (20 HSPs)
chr4 (180-242)||(5362033-5362095)
chr4 (183-234)||(9149813-9149864)
chr4 (185-239)||(5375666-5375720)
chr4 (182-236)||(10142898-10142952)
chr4 (182-239)||(13023566-13023624)
chr4 (182-239)||(13551695-13551752)
chr4 (182-239)||(36120823-36120880)
chr4 (183-239)||(8011289-8011345)
chr4 (184-242)||(17466080-17466138)
chr4 (182-239)||(24719516-24719573)
chr4 (183-239)||(4156763-4156819)
chr4 (183-239)||(9770112-9770168)
chr4 (182-239)||(7452419-7452476)
chr4 (182-239)||(8889227-8889284)
chr4 (184-239)||(7044728-7044783)
chr4 (182-239)||(23065036-23065093)
chr4 (182-234)||(610668-610720)
chr4 (182-234)||(18327342-18327394)
chr4 (182-234)||(18438003-18438055)
chr4 (180-232)||(18459788-18459840)
[»] chr3 (19 HSPs)
chr3 (182-239)||(29067283-29067340)
chr3 (182-239)||(28745769-28745826)
chr3 (184-237)||(3449366-3449419)
chr3 (183-239)||(20756039-20756095)
chr3 (182-231)||(24620284-24620333)
chr3 (182-242)||(17796376-17796436)
chr3 (182-242)||(19104816-19104876)
chr3 (182-242)||(25870446-25870506)
chr3 (182-239)||(8156204-8156261)
chr3 (182-239)||(27676355-27676412)
chr3 (183-239)||(24649762-24649818)
chr3 (187-231)||(42696870-42696914)
chr3 (192-239)||(21963438-21963485)
chr3 (192-239)||(21985874-21985921)
chr3 (184-239)||(28135723-28135778)
chr3 (188-230)||(17064326-17064368)
chr3 (186-239)||(39427905-39427958)
chr3 (183-239)||(13005927-13005983)
chr3 (182-226)||(22356139-22356183)
[»] chr2 (16 HSPs)
chr2 (182-239)||(1404782-1404839)
chr2 (180-239)||(23863394-23863453)
chr2 (182-239)||(31238050-31238107)
chr2 (182-239)||(36429847-36429904)
chr2 (182-234)||(19245152-19245204)
chr2 (182-238)||(30432418-30432474)
chr2 (185-239)||(31578007-31578061)
chr2 (182-239)||(1690835-1690892)
chr2 (184-240)||(35566026-35566082)
chr2 (181-227)||(15627653-15627699)
chr2 (183-242)||(19491855-19491916)
chr2 (182-239)||(15588923-15588979)
chr2 (181-242)||(20063712-20063773)
chr2 (182-242)||(5395718-5395778)
chr2 (182-242)||(15266081-15266141)
chr2 (183-227)||(29660893-29660937)
[»] chr1 (23 HSPs)
chr1 (182-239)||(9955108-9955165)
chr1 (183-242)||(13276336-13276395)
chr1 (184-238)||(42180139-42180193)
chr1 (183-240)||(14074442-14074499)
chr1 (183-242)||(23528656-23528715)
chr1 (185-239)||(12513283-12513337)
chr1 (181-239)||(25146841-25146899)
chr1 (182-239)||(9352136-9352193)
chr1 (183-239)||(12800654-12800710)
chr1 (183-239)||(30619075-30619131)
chr1 (182-236)||(9327291-9327345)
chr1 (185-239)||(19010019-19010073)
chr1 (182-239)||(13100190-13100247)
chr1 (182-239)||(18304884-18304941)
chr1 (182-239)||(21846341-21846398)
chr1 (182-239)||(34478843-34478900)
chr1 (183-239)||(9128913-9128969)
chr1 (186-230)||(27917534-27917578)
chr1 (190-237)||(16125533-16125580)
chr1 (182-239)||(41032743-41032800)
chr1 (182-228)||(47785791-47785837)
chr1 (182-239)||(24117006-24117063)
chr1 (186-234)||(12003241-12003289)
[»] chr7 (23 HSPs)
chr7 (183-239)||(11326386-11326442)
chr7 (182-242)||(27221417-27221477)
chr7 (183-239)||(44944922-44944978)
chr7 (183-234)||(21846503-21846554)
chr7 (183-239)||(22687737-22687793)
chr7 (183-234)||(5715290-5715341)
chr7 (182-239)||(8330118-8330175)
chr7 (182-239)||(9685317-9685374)
chr7 (182-239)||(26281382-26281439)
chr7 (184-239)||(5058530-5058585)
chr7 (185-239)||(8346606-8346660)
chr7 (183-237)||(24990146-24990200)
chr7 (181-233)||(39182258-39182310)
chr7 (181-239)||(7730416-7730473)
chr7 (181-239)||(8571241-8571299)
chr7 (182-239)||(24725550-24725607)
chr7 (183-239)||(4247356-4247412)
chr7 (183-230)||(6916786-6916833)
chr7 (182-239)||(14055250-14055307)
chr7 (182-239)||(14365278-14365335)
chr7 (189-242)||(20570949-20571002)
chr7 (182-234)||(8630036-8630088)
chr7 (183-227)||(30294175-30294219)
[»] scaffold0417 (1 HSPs)
scaffold0417 (182-237)||(7530-7585)
[»] chr8 (18 HSPs)
chr8 (182-239)||(5922048-5922105)
chr8 (183-239)||(17646993-17647049)
chr8 (182-238)||(31424162-31424218)
chr8 (181-239)||(477120-477178)
chr8 (185-239)||(15294672-15294726)
chr8 (185-239)||(15475041-15475095)
chr8 (183-237)||(45403029-45403083)
chr8 (182-239)||(11879599-11879656)
chr8 (182-239)||(11897015-11897072)
chr8 (182-239)||(22910275-22910332)
chr8 (182-230)||(23136348-23136396)
chr8 (182-239)||(30240702-30240759)
chr8 (182-234)||(17788384-17788436)
chr8 (180-239)||(24056641-24056700)
chr8 (182-216)||(27672311-27672345)
chr8 (182-242)||(1018332-1018392)
chr8 (184-228)||(9036757-9036801)
chr8 (180-239)||(19704528-19704588)
[»] scaffold0186 (1 HSPs)
scaffold0186 (182-239)||(8442-8499)
[»] scaffold0510 (1 HSPs)
scaffold0510 (181-239)||(174-232)
[»] scaffold0042 (1 HSPs)
scaffold0042 (180-216)||(93800-93836)
[»] scaffold0163 (1 HSPs)
scaffold0163 (183-234)||(2388-2439)
[»] scaffold0115 (1 HSPs)
scaffold0115 (183-217)||(35154-35188)
[»] scaffold0036 (1 HSPs)
scaffold0036 (182-228)||(37250-37296)
[»] scaffold0603 (1 HSPs)
scaffold0603 (182-227)||(9105-9150)
[»] scaffold0048 (1 HSPs)
scaffold0048 (182-239)||(48861-48918)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 30912679 - 30912485
Alignment:
Q  45 aaaatgaaagaactacctctcaacaagagaatgagatggatacaagtgttgaggacgataatggactacctccattggaagccaattgatgaagatttag 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30912679 aaaatgaaagaactacctctcaacaagagaatgagatggatacaagtgatgaggatgataatggactacctccattggaagccaattgatgaagatttag 30912580  T
Q  145 aattcaatttagatacagatgattatatagttggctacattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  30912579 aatttaatttaaatacagatgattatatagttggctacattgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttca 30912485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 7223518 - 7223575
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7223518 cattgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttca 7223575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 6943590 - 6943533
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  6943590 cattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttca 6943533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 7918510 - 7918454
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  7918510 attgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttttttca 7918454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 15528239 - 15528183
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  15528239 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttca 15528183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 26053425 - 26053369
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  26053425 attgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttca 26053369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 26073478 - 26073422
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  26073478 attgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttca 26073422  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 17543870 - 17543813
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||| |||||||||| |||||||| |||||||||||||||| ||||    
T  17543870 cattgttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgacttttttca 17543813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 2912373 - 2912317
Alignment:
Q  186 gttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||||| |||||    
T  2912373 gttgtcaaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatct 2912317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 5422878 - 5422821
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||| ||||| ||||    
T  5422878 cattgttgtcaaaatcccgacttaaatactaaaattcatgattttgcaactttattca 5422821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 17103201 - 17103250
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgac 231  Q
    |||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  17103201 cattgttgtcaaaatcccgacttaaatcttaaaattcaggattttgcgac 17103250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 8545087 - 8545043
Alignment:
Q  190 tcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    |||||||||||| |||||| |||||||||||||||||||||||||    
T  8545087 tcaaaatcccgatttaaatcctaaaatttaggattttgcgacttt 8545043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 17250057 - 17250113
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||| ||||||||||||||||| |||||||  |||||||||| ||||||||||    
T  17250057 attgttgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttca 17250113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 30900353 - 30900314
Alignment:
Q  50 gaaagaactacctctcaacaagagaatgagatggatacaa 89  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  30900353 gaaagaactacctctcaacaagagaatgagatggacacaa 30900314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 23897809 - 23897867
Alignment:
Q  181 acattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||  || |||||||||||||| |||||||  |||||||||||||||||||||    
T  23897809 acattgttgataagatcccgacttaaatcctaaaatgcaggattttgcgactttcttca 23897867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 27233407 - 27233350
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||| | ||||||||||| |||||||  ||||||||| |||||||||||    
T  27233407 cattgttgtcaaactaccgacttaaatcctaaaatccaggattttgtgactttcttca 27233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 10958317 - 10958266
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactt 233  Q
    |||||||||||||||| ||||||||||   |||||| |||||||||||||||    
T  10958317 cattgttgtcaaaatcgcgacttaaatctcaaaattcaggattttgcgactt 10958266  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 3574059 - 3574005
Alignment:
Q  185 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||| ||||||| |||||||||||||||||||  || |||| |||||||||||||    
T  3574059 tgttttcaaaattccgacttaaattctaaaatccagaatttcgcgactttcttca 3574005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 10509153 - 10509096
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||| |||||||||||| ||||||||| |||||||| || | |||| |||||||||||    
T  10509153 cattattgtcaaaatccagacttaaatcctaaaattcagaaatttgtgactttcttca 10509096  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 11327702 - 11327641
Alignment:
Q  181 acattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    |||||||||||||||||||||||||||  |||||||  | | |||||||  |||||||||||    
T  11327702 acattgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatct 11327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 23172560 - 23172502
Alignment:
Q  184 ttgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23172560 ttgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatct 23172502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 18051660 - 18051603
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  18051660 cattgttgtcaaaatcccgacttaaatcctaaaatataggattttgcgactttcttca 18051603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 21059285 - 21059228
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  21059285 cattgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttca 21059228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 43234868 - 43234924
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  43234868 attgttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactttcttca 43234924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 19042516 - 19042462
Alignment:
Q  185 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  19042516 tgttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactttcttca 19042462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 38158383 - 38158329
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttctt 237  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  38158383 attgttgtcaaaattccgacttaaatcctaaaatctaggattttgcgactttctt 38158329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 22645849 - 22645792
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||| |||||||  || ||||||||||||||||||    
T  22645849 cattgttgtcaaaatcccgacttaaatcctaaaatccagtattttgcgactttcttca 22645792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 20923718 - 20923774
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||||||||| |||||||  || ||||||||||||||||||    
T  20923718 attgttgtcaaaatcccgacttaaatcctaaaatccagaattttgcgactttcttca 20923774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 27340307 - 27340256
Alignment:
Q  191 caaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  27340307 caaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatct 27340256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 18843716 - 18843771
Alignment:
Q  184 ttgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||| ||||| ||||||||||| ||| |||| |||||||||||||||||||||    
T  18843716 ttgttgttaaaattccgacttaaatcctataattcaggattttgcgactttcttca 18843771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 20320926 - 20320980
Alignment:
Q  185 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||| || ||||| |||||||||| |||||||| ||||||||||    
T  20320926 tgttgtcaaaatcccaacctaaatcctaaaatttaagattttgcaactttcttca 20320980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 24647938 - 24647990
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    ||||||||||||||| |||||||||||  ||||||||| ||| ||||||||||    
T  24647938 cattgttgtcaaaattccgacttaaatcttaaaatttaagatattgcgacttt 24647990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 19578940 - 19578998
Alignment:
Q  181 acattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||| || ||||||||  ||||||  |||||||||||| ||||||||    
T  19578940 acattgttgtcaaaattccaacttaaatcataaaatccaggattttgcgattttcttca 19578998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 24106645 - 24106697
Alignment:
Q  187 ttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||| || ||||||  ||||||| |||||||||| ||||||||||    
T  24106645 ttgtcaaaatcctgatttaaatcataaaattcaggattttgcaactttcttca 24106697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 5362095 - 5362033
Alignment:
Q  180 tacattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  5362095 tacattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatct 5362033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 9149864 - 9149813
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  9149864 attgtggtcaaaatcccgacttaaatcctaaaatttaggattttgcgacttt 9149813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 5375666 - 5375720
Alignment:
Q  185 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||||||||    
T  5375666 tgttgtcaaaatcccaacctaaattctaaaatttaagattttgcgactttcttca 5375720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 10142898 - 10142952
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttct 236  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||||||    
T  10142898 cattgttgtgaaaatcccgacttaaattctaaaatttaatattttgcgactttct 10142952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 13023566 - 13023624
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaa-tttaggattttgcgactttcttca 239  Q
    |||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  13023566 cattgttgtcaaaatcccaacttaaatcctaaaaatttaggattttgcgactttcttca 13023624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 13551752 - 13551695
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||||    
T  13551752 cattgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttca 13551695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 36120823 - 36120880
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||    
T  36120823 cattgttgtcaaaattccgatttaaattttaaaatttaggattttgcgattttcttca 36120880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 8011345 - 8011289
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||    
T  8011345 attgttgtcaaaatcccaactcaaatcctaaaattcaggattttgcgactttcttca 8011289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 17466080 - 17466138
Alignment:
Q  184 ttgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    ||||||||||||| || ||||||||  |||||||||||||||||||| |||||||||||    
T  17466080 ttgttgtcaaaattccaacttaaatcttaaaatttaggattttgcgattttcttcatct 17466138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 24719516 - 24719573
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||| |||||||| |||||||||| | |||||||||||||| ||||    
T  24719516 cattgttgtcaaaatctcgacttaatttctaaaattcaagattttgcgactttattca 24719573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 4156763 - 4156819
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||  ||||||||||||||||  |||||| ||||    
T  4156763 attgttgtcaaaatcccgacttaaatcttaaaatttaggattttatgactttattca 4156819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 9770112 - 9770168
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||| |||||| |||||||||||||||||| |||||||||| |||||| ||||    
T  9770112 attgttgttaaaatctcgacttaaattctaaaatctaggattttgtgacttttttca 9770168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 7452419 - 7452476
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||| |||||||||||||||||||||||||  || ||||||| ||||| ||||    
T  7452419 cattgttgtgaaaatcccgacttaaattctaaaatccagaattttgcaactttattca 7452476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 8889227 - 8889284
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||| ||||||||||||||||||||| |||||||  ||||||||| || ||||||||    
T  8889227 cattgatgtcaaaatcccgacttaaatcctaaaatccaggattttgtgaatttcttca 8889284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 7044728 - 7044783
Alignment:
Q  184 ttgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||| |||||||  | |||||||| ||||| ||||    
T  7044728 ttgttgtcaaaatcccgacttaaatcctaaaatccatgattttgcaactttattca 7044783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 23065093 - 23065036
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||| |||| ||||||||||||||||||||  || ||||||  ||||||||||    
T  23065093 cattgttgttaaaaccccgacttaaattctaaaatccagtattttgtaactttcttca 23065036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 610720 - 610668
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    |||||||||||||||||| |||||||| |||||||| | || | |||||||||    
T  610720 cattgttgtcaaaatcccaacttaaatactaaaattcatgactatgcgacttt 610668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 18327342 - 18327394
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    |||||||||||||||| ||| |||| |   |||||||||||||||||||||||    
T  18327342 cattgttgtcaaaatcacgaattaagtctcaaaatttaggattttgcgacttt 18327394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 18438055 - 18438003
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    |||||||||||||||| ||| |||| |   |||||||||||||||||||||||    
T  18438055 cattgttgtcaaaatcacgaattaagtctcaaaatttaggattttgcgacttt 18438003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 18459840 - 18459788
Alignment:
Q  180 tacattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgact 232  Q
    ||||||||||| |||||||||||| |||| |||||||  | ||||||||||||    
T  18459840 tacattgttgtaaaaatcccgactaaaatcctaaaatccaagattttgcgact 18459788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 29067283 - 29067340
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29067283 cattgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 29067340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 28745769 - 28745826
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  28745769 cattgttgtcaaaatcccgatttaaatcctaaaatttaggattttgcgactttcttca 28745826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 3449419 - 3449366
Alignment:
Q  184 ttgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttctt 237  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  3449419 ttgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttctt 3449366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 20756039 - 20756095
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||    
T  20756039 attgttgtcaaaatcccgacttaaattataaaattcaggattttgcgattttcttca 20756095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 24620333 - 24620284
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgac 231  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||||||||    
T  24620333 cattgttgtcaaaattccgacttaaatcctaaaatttaagattttgcgac 24620284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 17796376 - 17796436
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    ||||||||||||||| |||||||||||  |||||| ||||||||| ||||||| |||||||    
T  17796376 cattgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatct 17796436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 19104816 - 19104876
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    ||||||||||||||| |||||||||||  |||||| ||||||||| ||||||| |||||||    
T  19104816 cattgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatct 19104876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 25870506 - 25870446
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    |||||||||||||||| |||||||||| |||||||  | ||||||| ||||||||||||||    
T  25870506 cattgttgtcaaaatctcgacttaaatcctaaaatccaagattttgtgactttcttcatct 25870446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 8156261 - 8156204
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||| ||||||||||||||||| || ||||| ||| ||| ||||    
T  8156261 cattgttgtcaaaatcccaacttaaattctaaaattcagaattttacgatttttttca 8156204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 27676355 - 27676412
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||| |||||||||  ||||||  |||||||||||||||| ||||    
T  27676355 cattgttgtcaaaatcctgacttaaatcgtaaaatgcaggattttgcgactttattca 27676412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 24649818 - 24649762
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||  |||||| |||||||||  ||||| |||||    
T  24649818 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttca 24649762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 42696870 - 42696914
Alignment:
Q  187 ttgtcaaaatcccgacttaaattctaaaatttaggattttgcgac 231  Q
    ||||||||||||||||||||||  ||||||| |||||||||||||    
T  42696870 ttgtcaaaatcccgacttaaatcataaaattcaggattttgcgac 42696914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 21963438 - 21963485
Alignment:
Q  192 aaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||| |||||||| | |||||| ||||||||||||    
T  21963438 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttca 21963485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 21985874 - 21985921
Alignment:
Q  192 aaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||| |||||||| | |||||| ||||||||||||    
T  21985874 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttca 21985921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 28135723 - 28135778
Alignment:
Q  184 ttgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||| |||| ||||||  ||||||| |||||||||||||||| ||||    
T  28135723 ttgttgtcaaaattccgatttaaatcgtaaaattcaggattttgcgactttattca 28135778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 17064326 - 17064368
Alignment:
Q  188 tgtcaaaatcccgacttaaattctaaaatttaggattttgcga 230  Q
    |||||||||||||||||||||  ||||||| ||||||||||||    
T  17064326 tgtcaaaatcccgacttaaatcttaaaattcaggattttgcga 17064368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 39427905 - 39427958
Alignment:
Q  186 gttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||| ||||||| ||||||   ||||||||| ||||||||||    
T  39427905 gttgtcaaaatcccgatttaaattttaaaatcctggattttgcaactttcttca 39427958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 13005927 - 13005983
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||| |||||||||||  |||||| |  ||||||||||||| ||||    
T  13005927 attgttgtcaaaatctcgacttaaatttcaaaattcataattttgcgactttattca 13005983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 22356183 - 22356139
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggatttt 226  Q
    ||||||| ||||||| ||||||||||| |||||||| ||||||||    
T  22356183 cattgttatcaaaattccgacttaaatcctaaaattcaggatttt 22356139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 1404782 - 1404839
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1404782 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactttcttca 1404839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 23863453 - 23863394
Alignment:
Q  180 tacattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  23863453 tacattgttgtcaaaatcccgacttaaattctaaaatcgagaattttgcgactttcttca 23863394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 31238107 - 31238050
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  31238107 cattgttgtcaaaatcccgacttaaatcctaaaatctaggattttgccactttcttca 31238050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 36429847 - 36429904
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||    
T  36429847 cattgttgtcaaaatcccaacttaaatcctataatctaggattttgcgactttcttca 36429904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 19245152 - 19245204
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  19245152 cattgttgtcaaaatcccgacttaaattttaaaattcaggattttacgacttt 19245204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 30432418 - 30432474
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttc 238  Q
    ||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||    
T  30432418 cattgttgtcaaaatcctgatttaaattctaaaatctaggatttttcgactttcttc 30432474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 31578007 - 31578061
Alignment:
Q  185 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||| ||||||||    
T  31578007 tgttgtcaaaatcccgacttaaatgttaaaatttaagattttgcgattttcttca 31578061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 1690892 - 1690835
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||  |||||||||||  ||||||||||||||||| |||||||||||    
T  1690892 cattgttgtcaaaactccgacttaaatcttaaaatttaggattttgtgactttcttca 1690835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 35566082 - 35566026
Alignment:
Q  184 ttgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcat 240  Q
    |||||||||||||||| ||||||||   |||||| ||||||||||||||||||||||    
T  35566082 ttgttgtcaaaatcccaacttaaatcacaaaattcaggattttgcgactttcttcat 35566026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 15627653 - 15627699
Alignment:
Q  181 acattgttgtcaaaatcccgacttaaattctaaaatttaggattttg 227  Q
    ||||| |||||||||||||||||||||| |||||||||| |||||||    
T  15627653 acattattgtcaaaatcccgacttaaatcctaaaatttatgattttg 15627699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 19491855 - 19491916
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattcta--aaatttaggattttgcgactttcttcatct 242  Q
    ||||||||||||||| ||| |||||| |||  |||| |||||||||||||||||||||||||    
T  19491855 attgttgtcaaaatctcgaattaaatcctataaaatctaggattttgcgactttcttcatct 19491916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 15588979 - 15588923
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||| |||||||||||||||||||  | ||||||| ||||||||||| |||||||||    
T  15588979 cattgctgtcaaaatcccgacttaatct-taaaattcaggattttgcgtctttcttca 15588923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 20063712 - 20063773
Alignment:
Q  181 acattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    |||||||||||||||||||||||||||  |||||||  | | |||||||  |||||||||||    
T  20063712 acattgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatct 20063773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 5395778 - 5395718
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    |||||||||||||||   ||| |||||  |||||| ||||||||||||||||| |||||||    
T  5395778 cattgttgtcaaaattttgacctaaatcataaaatataggattttgcgactttattcatct 5395718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 15266081 - 15266141
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    ||||||||||||||||  || |||||| |||||||| |||||||||  ||||| |||||||    
T  15266081 cattgttgtcaaaatcatgatttaaatcctaaaattcaggattttgtaactttattcatct 15266141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 29660893 - 29660937
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttg 227  Q
    |||||||||||||  ||||||||||| ||||||| ||||||||||    
T  29660893 attgttgtcaaaaatccgacttaaatcctaaaatctaggattttg 29660937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 9955165 - 9955108
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  9955165 cattgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttca 9955108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 13276395 - 13276336
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  13276395 attgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcatct 13276336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 42180193 - 42180139
Alignment:
Q  184 ttgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttc 238  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  42180193 ttgttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactttcttc 42180139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 14074499 - 14074442
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcat 240  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||    
T  14074499 attgttgtcaaaatcccgtcttaaatcctaaaatgtaggattttgcgactttcttcat 14074442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 23528656 - 23528715
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    ||||||||||||||||| ||||||||  ||||||| ||||||||||||||||||||||||    
T  23528656 attgttgtcaaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatct 23528715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 12513283 - 12513337
Alignment:
Q  185 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||    
T  12513283 tgttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttca 12513337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 25146899 - 25146841
Alignment:
Q  181 acattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||    
T  25146899 acattgttgtcaaaatcctgacttaaatcctaaaattcagaattttgcgactttcttca 25146841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 9352193 - 9352136
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||| |||||||  ||| |||||||||||||||||    
T  9352193 cattgttgtcaaaatcccgacttaaatcctaaaatccagggttttgcgactttcttca 9352136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 12800710 - 12800654
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  12800710 attgttgtgaaaatcccaacttaaatcctaaaatttaggattttacgactttcttca 12800654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 30619075 - 30619131
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||| ||||||||    
T  30619075 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgattttcttca 30619131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 9327345 - 9327291
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttct 236  Q
    ||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||    
T  9327345 cattgttgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttct 9327291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 19010073 - 19010019
Alignment:
Q  185 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||    
T  19010073 tgttgtcaaaatccggacttaaatcctaaaattcaggattttgcgacttttttca 19010019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 13100190 - 13100247
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||| ||||||||||||| ||||||||||||||||  |||||||| ||||||||||||    
T  13100190 cattattgtcaaaatcccaacttaaattctaaaatcgaggattttacgactttcttca 13100247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 18304941 - 18304884
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||| |||||||| |||||||  || ||||||||||||||||||    
T  18304941 cattgttgtcaaaatcccaacttaaatcctaaaatccagtattttgcgactttcttca 18304884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 21846398 - 21846341
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||||||||| ||||    
T  21846398 cattgttgtcaaaatcccgagttaaatcctaaaatccaggattttgcgacttttttca 21846341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 34478900 - 34478843
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||| |||||||||||||||||  |||||||| |||||||| |||||||||||    
T  34478900 cattgttgttaaaatcccgacttaaatcttaaaatttgggattttgtgactttcttca 34478843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 9128969 - 9128913
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||| |||||| |||||||||| |||||| ||||||| |||||||||||||||    
T  9128969 attgttgttaaaatcacgacttaaatcctaaaaattaggatcttgcgactttcttca 9128913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 27917578 - 27917534
Alignment:
Q  186 gttgtcaaaatcccgacttaaattctaaaatttaggattttgcga 230  Q
    |||||||||||||||||||||||||| |||| |||||||||||||    
T  27917578 gttgtcaaaatcccgacttaaattctgaaatctaggattttgcga 27917534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 16125580 - 16125533
Alignment:
Q  190 tcaaaatcccgacttaaattctaaaatttaggattttgcgactttctt 237  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  16125580 tcaaaatcctgacttaaatcctaaaattcaggattttgcgactttctt 16125533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 41032800 - 41032743
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||| ||||||||||  || |||| |||||||||||| ||||||||    
T  41032800 cattgttgtcaaaatctcgacttaaatcgtagaattcaggattttgcgattttcttca 41032743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 47785791 - 47785837
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgc 228  Q
    |||||||||||||||||| || ||||| |||||||| ||||||||||    
T  47785791 cattgttgtcaaaatcccaacataaatcctaaaattcaggattttgc 47785837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 24117006 - 24117063
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||| || | ||||||||||||||||| |||||| | ||||| ||||    
T  24117006 cattgttgtcaaaattccaatttaaattctaaaatttaagattttacaactttattca 24117063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 12003289 - 12003241
Alignment:
Q  186 gttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    ||||||||||||||||||||| || ||||||| ||| ||||| ||||||    
T  12003289 gttgtcaaaatcccgacttaagttttaaaattcaggtttttgtgacttt 12003241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 11326386 - 11326442
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  11326386 attgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttca 11326442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 27221417 - 27221477
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  27221417 cattgttgttaaaatcccaacttaaattctaaaattcaggattttgcgactttcttcatct 27221477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 44944978 - 44944922
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  44944978 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttca 44944922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 21846554 - 21846503
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21846554 attgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt 21846503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 22687793 - 22687737
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  22687793 attgttgtcaaaatcccgacttaaatcctaaaattcaggaatttgcgactttcttca 22687737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 5715290 - 5715341
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  5715290 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgacttt 5715341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 8330175 - 8330118
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||    
T  8330175 cattgttgtcaaaatcctgacctaaattctaaaattcatgattttgcgactttcttca 8330118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 9685374 - 9685317
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||||    
T  9685374 cattgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttca 9685317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 26281439 - 26281382
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||||    
T  26281439 cattgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttca 26281382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 5058530 - 5058585
Alignment:
Q  184 ttgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||||||    
T  5058530 ttgttgtcaaaatcccgacttaaatcctaaaattcagaattttgcgattttcttca 5058585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 8346660 - 8346606
Alignment:
Q  185 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||| ||| |||||  |||||||||||||||||||||||||||||    
T  8346660 tgttgtcaaaatcctgacctaaatattaaaatttaggattttgcgactttcttca 8346606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 24990200 - 24990146
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttctt 237  Q
    |||||||||||||| ||||||||||| | |||||||||||||||| |||||||||    
T  24990200 attgttgtcaaaattccgacttaaatccaaaaatttaggattttgtgactttctt 24990146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 39182258 - 39182310
Alignment:
Q  181 acattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactt 233  Q
    ||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||    
T  39182258 acattgttgacaaaatcctgacttaaatcctaaaatctaggattttgcgactt 39182310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 7730473 - 7730416
Alignment:
Q  181 acattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||| ||||||||| |||||||  ||| |||||||||||||||||    
T  7730473 acattgttgtcaaaatcctgacttaaatcctaaaatccagg-ttttgcgactttcttca 7730416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 8571241 - 8571299
Alignment:
Q  181 acattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||| ||| |||||||||||||||||||  ||||||  |||||||||||||||||||||    
T  8571241 acatagttctcaaaatcccgacttaaatcataaaatccaggattttgcgactttcttca 8571299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 24725607 - 24725550
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||| ||||||||| |||||||  | |||||| ||||||||||||    
T  24725607 cattgttgtcaaaatccagacttaaatcctaaaatccaagattttacgactttcttca 24725550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 4247356 - 4247412
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||| | |||||| |||||||| |||||||||  ||||||||||    
T  4247356 attgttgtcaaaatcccaatttaaatcctaaaattcaggattttgtaactttcttca 4247412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 6916786 - 6916833
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcga 230  Q
    ||||||||||||||||||| ||||||  | ||||||||||||||||||    
T  6916786 attgttgtcaaaatcccgatttaaatcttgaaatttaggattttgcga 6916833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 14055250 - 14055307
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||| |||||||| ||||| || |||||||  | |||||||||||||||||||    
T  14055250 cattgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttca 14055307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 14365278 - 14365335
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||| |||||||| ||||| || |||||||  | |||||||||||||||||||    
T  14365278 cattgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttca 14365335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 20571002 - 20570949
Alignment:
Q  189 gtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    |||||| |||||||||||||||| ||||  | ||||||| ||||||||||||||    
T  20571002 gtcaaactcccgacttaaattctgaaatccaagattttgtgactttcttcatct 20570949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 8630088 - 8630036
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    |||||||||||||||| |||||||| | | ||||| ||||||||||| |||||    
T  8630088 cattgttgtcaaaatcgcgacttaagtcccaaaatctaggattttgcaacttt 8630036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 30294175 - 30294219
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttg 227  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||    
T  30294175 attgttgtcaaaatcccaacttaaatcctaaaatccaggattttg 30294219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 7585 - 7530
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttctt 237  Q
    ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  7585 cattgttgttagaatcccgacttaaattctaaaattcaggattttgcgactttctt 7530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 5922048 - 5922105
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||| |||||||||||    
T  5922048 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgtgactttcttca 5922105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 17646993 - 17647049
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||| |||||||||||  ||||||| |||||||||||||||||||||    
T  17646993 attgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttca 17647049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 31424162 - 31424218
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttc 238  Q
    |||| |||||||||||| |||||||||||||||||| |||||||| |||||||||||    
T  31424162 cattattgtcaaaatcctgacttaaattctaaaattcaggattttacgactttcttc 31424218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 477178 - 477120
Alignment:
Q  181 acattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||| ||||||||| |||||||  ||||||||| |||||||||||    
T  477178 acattgttgtcaaaatcctgacttaaatcctaaaatccaggattttgtgactttcttca 477120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 15294672 - 15294726
Alignment:
Q  185 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  15294672 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttca 15294726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 15475041 - 15475095
Alignment:
Q  185 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  15475041 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttca 15475095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 45403029 - 45403083
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttctt 237  Q
    ||||||||||||||| ||||||||||||||||||  | |||||||||||||||||    
T  45403029 attgttgtcaaaatcgcgacttaaattctaaaatccaagattttgcgactttctt 45403083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 11879599 - 11879656
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||| | ||||||||| |||||||| |||||||||| ||||||||||    
T  11879599 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttca 11879656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 11897015 - 11897072
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||||||||| | ||||||||| |||||||| |||||||||| ||||||||||    
T  11897015 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttca 11897072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 22910332 - 22910275
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||| ||| || |||||||||||||| ||||||||||||||||| ||||||||||||    
T  22910332 cattgatgtaaacatcccgacttaaatcctaaaatttaggattttacgactttcttca 22910275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 23136348 - 23136396
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcga 230  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  23136348 cattattgtcaaaatcccgacttaaatcctaaaattcaggattttgcga 23136396  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 30240759 - 30240702
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||| |||||||| ||| |||||||||||||| ||||||||| ||||||| ||||    
T  30240759 cattgttatcaaaatcgcgatttaaattctaaaatataggatttttcgactttattca 30240702  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 17788436 - 17788384
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    |||||||||||||||| | ||||||||| |||||| |||||||||| ||||||    
T  17788436 cattgttgtcaaaatcgcaacttaaattttaaaatctaggattttgagacttt 17788384  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 24056700 - 24056641
Alignment:
Q  180 tacattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||| ||||||||  ||||||||| |||||||  |||||||||||||||| ||||    
T  24056700 tacattgttatcaaaatcttgacttaaatcctaaaatccaggattttgcgactttattca 24056641  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 27672345 - 27672311
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaat 216  Q
    |||||||| ||||||||||||||||||||||||||    
T  27672345 cattgttgccaaaatcccgacttaaattctaaaat 27672311  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 1018392 - 1018332
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttcatct 242  Q
    |||| ||||||||||   || ||||||||||||| ||||||| |||||||||| |||||||    
T  1018392 catttttgtcaaaattttgatttaaattctaaaacttaggatattgcgacttttttcatct 1018332  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 9036801 - 9036757
Alignment:
Q  184 ttgttgtcaaaatcccgacttaaattctaaaatttaggattttgc 228  Q
    |||||||||||| || ||||||||| |||||||| ||||||||||    
T  9036801 ttgttgtcaaaaacctgacttaaatcctaaaattcaggattttgc 9036757  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 19704588 - 19704528
Alignment:
Q  180 tacattgttgtcaaaatcccgacttaaattctaaaatt-taggattttgcgactttcttca 239  Q
    |||| ||||||||||||||| ||||||||  |||||||  ||| |||||||||||||||||    
T  19704588 tacactgttgtcaaaatcccaacttaaatcttaaaattcaaggtttttgcgactttcttca 19704528  T

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Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 8442 - 8499
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||||||||||| |||||||| |||||||  | |||||||||||||||||||    
T  8442 cattgttgtcaaaatccctacttaaatcctaaaatccacgattttgcgactttcttca 8499  T

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Target: scaffold0510 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 232 - 174
Alignment:
Q  181 acattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    |||||||||  || |||||||||||||| |||||||  |||||||||||||||||||||    
T  232 acattgttgataagatcccgacttaaatcctaaaatgcaggattttgcgactttcttca 174  T

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Target: scaffold0042 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 93836 - 93800
Alignment:
Q  180 tacattgttgtcaaaatcccgacttaaattctaaaat 216  Q
    ||||||||||||||||||||||||||||| |||||||    
T  93836 tacattgttgtcaaaatcccgacttaaatcctaaaat 93800  T

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Target: scaffold0163 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 2388 - 2439
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgacttt 234  Q
    |||||||||| |||| |||||||| ||| |||||||||||| ||||||||||    
T  2388 attgttgtcagaatcacgacttaagttccaaaatttaggatcttgcgacttt 2439  T

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Target: scaffold0115 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 35188 - 35154
Alignment:
Q  183 attgttgtcaaaatcccgacttaaattctaaaatt 217  Q
    ||||||||||||||| |||||||||||||||||||    
T  35188 attgttgtcaaaatctcgacttaaattctaaaatt 35154  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 37296 - 37250
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgc 228  Q
    ||||||||||||||| |||||||||||| ||||||| || |||||||    
T  37296 cattgttgtcaaaatgccgacttaaattttaaaattcagaattttgc 37250  T

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Target: scaffold0603 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 9150 - 9105
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttg 227  Q
    ||||||||||||||||| || ||||||| |||||| ||||||||||    
T  9150 cattgttgtcaaaatcctgatttaaattttaaaatgtaggattttg 9105  T

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Target: scaffold0048 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 48918 - 48861
Alignment:
Q  182 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgcgactttcttca 239  Q
    ||||||||| ||||| ||||||||||| ||||||| ||| ||||||| ||||| ||||    
T  48918 cattgttgtgaaaattccgacttaaatcctaaaatctagaattttgcaactttattca 48861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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