View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0728_low_23 (Length: 259)
Name: NF0728_low_23
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 15192670 - 15192448
Alignment:
| Q |
1 |
ccagtgtcctgcaggagaacgttaaatctagaacaaaatggacaccgccatatgcagcaataattcccttattagcatatgaacaccaactagtttgacc |
100 |
Q |
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| T |
15192670 |
ccagtgtcctgcaggagaacgttaaatctagaacaaaatggacaccgccatatgcagcaataattcccttattagcatatgaacaccaactagtttgacc |
15192571 |
T |
|
| Q |
101 |
aaggctaataatgatgattagcatttctagcagacattgaccaaggagtttcgagtttcgagtttgattcttacgaatccaaattaattatggcttaagc |
200 |
Q |
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| T |
15192570 |
aaggctaataatgatgattagcatttctagcagacattgaccaaggagtttcga-------gtttgattcttacaaatccaaattaattatggcttaagc |
15192478 |
T |
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| Q |
201 |
cattgacattctttatatgaacattgccat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
15192477 |
cattgacattctttatatgaacattgccat |
15192448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 15212772 - 15212644
Alignment:
| Q |
4 |
gtgtcctgcaggagaacgttaaatctagaacaaaatggacaccgccatatgcagcaataattcccttattagcatatgaacaccaactagtttgaccaag |
103 |
Q |
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| T |
15212772 |
gtgtcctgaaagagaacattaaatctagaacaagcgggacactgccatatgcagcaataattcccttattggc--atgaacgtcggctagtttgacaaag |
15212675 |
T |
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| Q |
104 |
gctaataatgatgattagcatttctagcaga |
134 |
Q |
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| T |
15212674 |
gctgataatgacaattagcatttatagcaga |
15212644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 15212614 - 15212560
Alignment:
| Q |
156 |
tttcgagtttgattcttacgaatccaaattaattatggcttaagccattgacatt |
210 |
Q |
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| T |
15212614 |
tttcgagtttggttcttccacatccaaattaattatggcttaagccattgacatt |
15212560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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