View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0728_low_25 (Length: 254)
Name: NF0728_low_25
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4129072 - 4128841
Alignment:
| Q |
1 |
tggttgtgctgtccaaatggattcaccttgttgagttgtcaacgtgagtcctccagatgttagctgaacttgtgatcctgtcggtgcttgtacgaggttg |
100 |
Q |
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| T |
4129072 |
tggttgtgctgtccaaatggattcaccttgttgagttgtcaacgtgagtcctcctgatgttagctgaacttgtgatcctgtcggtgcttgtacgaggttg |
4128973 |
T |
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| Q |
101 |
ttgttgttcgtgtttttagcactccaaacaatggttttttcaggtatcttgttgtaccatattgcaagcatgaagagatttgttgctgtaccaagttgtt |
200 |
Q |
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| T |
4128972 |
ttgttgttcgtgtttttagcactccaaacaatggttttttcaggtatcttgttgtaccatattgcaagcatgaagagatttgttgctgtaccaagttgtt |
4128873 |
T |
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| Q |
201 |
gaaacccgaaagcaaattcaccagaagatgat |
232 |
Q |
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| T |
4128872 |
gaaacccgaaagcaaattcaccagaaggtgat |
4128841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 4105882 - 4105706
Alignment:
| Q |
1 |
tggttgtgctgtccaaatggattcaccttgttgagttgtcaacgtgagtcctccagatgttagctgaacttgtgatcctgtcggtgcttgtacgaggttg |
100 |
Q |
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||||||||||||||||||||||||| |||| || |||||||||||||||| || |||||||||||||| ||||||||||| |||||| ||||||||||| |
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| T |
4105882 |
tggttgtgctgtccaaatggattcattttgtggatttgtcaacgtgagtccacctgatgttagctgaacctgtgatcctgttggtgctagtacgaggttg |
4105783 |
T |
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| Q |
101 |
t---tgttgttcgtgtttttagcactccaaacaatggttttttcaggtatcttgttgtaccatattgcaagcatgaa |
174 |
Q |
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| T |
4105782 |
ttgctgttgttcatgtctttggcgctccaaacaatggtttgatcatgtatgttgttgtaccatattgcaagcatgaa |
4105706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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