View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0728_low_26 (Length: 253)

Name: NF0728_low_26
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0728_low_26
NF0728_low_26
[»] chr4 (3 HSPs)
chr4 (162-244)||(55989925-55990007)
chr4 (107-166)||(55989215-55989274)
chr4 (32-69)||(55989140-55989177)
[»] chr6 (1 HSPs)
chr6 (168-230)||(24269061-24269123)
[»] chr2 (1 HSPs)
chr2 (168-244)||(27909264-27909340)
[»] chr7 (1 HSPs)
chr7 (168-217)||(3604516-3604565)
[»] chr5 (2 HSPs)
chr5 (163-222)||(10876799-10876858)
chr5 (163-222)||(10881870-10881929)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 55989925 - 55990007
Alignment:
Q  162 aagcaccccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaatcatgcaagaagggtgctagaataatct 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  55989925 aagcaccccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaattatgcaagaagggcgctagaagaatct 55990007  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 55989215 - 55989274
Alignment:
Q  107 accggtcgtatcttcagttccattttgtgcgatgattatagggtatttatagattaagca 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55989215 accggtcgtatcttcagttccattttgtgcgatgattatagggtatttatagattaagca 55989274  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 55989140 - 55989177
Alignment:
Q  32 cttcagaacttggtagatgtatctgttcaactttaaca 69  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55989140 cttcagaacttggtagatgtatctgttcaactttaaca 55989177  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 24269061 - 24269123
Alignment:
Q  168 cccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaatcatgcaagaaggg 230  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  24269061 cccaccaaaaatatgagaagaaagaacttgaagatccaaagtgaaacaattatgcaagaaggg 24269123  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 27909340 - 27909264
Alignment:
Q  168 cccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaatcatgcaagaagggtgctagaataatct 244  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||| ||||||| |||||    
T  27909340 cccaccaaaaatatgagaagaaagaacttgaagacacaaagtgatacatttatgcaagaagggcgctagaagaatct 27909264  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 3604516 - 3604565
Alignment:
Q  168 cccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaat 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3604516 cccaccaaaaatatgagatgaaagaacttgaagacccaaagtgaaacaat 3604565  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 10876858 - 10876799
Alignment:
Q  163 agcaccccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaatcatgc 222  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  10876858 agcatcccaccaaaaatatgagaagaaagaacgtgaagatccaaagtgaaataattatgc 10876799  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 10881929 - 10881870
Alignment:
Q  163 agcaccccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaatcatgc 222  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  10881929 agcatcccaccaaaaatatgagaagaaagaacgtgaagatccaaagtgaaataattatgc 10881870  T

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