View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0728_low_27 (Length: 251)

Name: NF0728_low_27
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0728_low_27
NF0728_low_27
[»] chr5 (1 HSPs)
chr5 (3-240)||(18622411-18622648)
[»] chr1 (3 HSPs)
chr1 (3-240)||(15095988-15096225)
chr1 (37-240)||(15107228-15107431)
chr1 (38-213)||(40361402-40361577)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 18622411 - 18622648
Alignment:
Q  3 ctattaccaatggttcccctcgtgaccatttcctaaaaaactcttctgctttttgaaactctcccgccctcttgtacaactgaacaacaacccccatggt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18622411 ctattaccaatggttcccctcgtgaccatttcctaaaaaactcttctgctttttgaaactctcgcgccctcttgtacaactgaacaacaacccccatggt 18622510  T
Q  103 gacctcatcaggttccatcccttgacttagcatcctctgaagccaaccaagcgcttcttctttaaatccacttttactataaacatcaatcaacgttcca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18622511 gacctcatcaggttccatcccttgacttagcatcctctgaagccaaccaagcgcttcttctttaaatccacttttactataaacatcaatcaacgttcca 18622610  T
Q  203 tacgttgaattcaccggcaaaaccccatttgcattcat 240  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18622611 tacgttgaattcaccggcaaaaccccatttgcattcat 18622648  T

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Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 15096225 - 15095988
Alignment:
Q  3 ctattaccaatggttcccctcgtgaccatttcctaaaaaactcttctgctttttgaaactctcccgccctcttgtacaactgaacaacaacccccatggt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15096225 ctattaccaatggttcccctcgtgaccatttcctaaaaaactcttctgctttttgaaactctcgcgccctcttgtacaactgaacaacaacccccatggt 15096126  T
Q  103 gacctcatcaggttccatcccttgacttagcatcctctgaagccaaccaagcgcttcttctttaaatccacttttactataaacatcaatcaacgttcca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15096125 gacctcatcaggttccatcccttgacttagcatcctctgaagccaaccaagcgcttcttctttaaatccacttttactataaacatcaatcaacgttcca 15096026  T
Q  203 tacgttgaattcaccggcaaaaccccatttgcattcat 240  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15096025 tacgttgaattcaccggcaaaaccccatttgcattcat 15095988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 15107431 - 15107228
Alignment:
Q  37 aaaaaactcttctgctttttgaaactctcccgccctcttgtacaactgaacaacaacccccatggtgacctcatcaggttccatcccttgacttagcatc 136  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| |||| |||||    
T  15107431 aaaaaactcttccgctttttgaaactctccagccctcttgtacaactgaacaacaacccccattgtaacctcatccggttccatcccttcactttgcatc 15107332  T
Q  137 ctctgaagccaaccaagcgcttcttctttaaatccacttttactataaacatcaatcaacgttccatacgttgaattcaccggcaaaaccccatttgcat 236  Q
    ||  |||||||| |||||||||||||  | |  |||| ||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||    
T  15107331 cttagaagccaagcaagcgcttcttcaatgagcccacctttactataaacatcaatcaacgttccatacgtcgaattcactggcacaaccccattttcat 15107232  T
Q  237 tcat 240  Q
    ||||    
T  15107231 tcat 15107228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 40361577 - 40361402
Alignment:
Q  38 aaaaactcttctgctttttgaaactctcccgccctcttgtacaactgaacaacaacccccatggtgacctcatcaggttccatcccttgacttagcatcc 137  Q
    |||||||| || ||||| ||||||||||| ||  |||| ||||| ||||| |||| | |||| || |||||||||||||| ||||| ||    |||||      
T  40361577 aaaaactcctcagctttctgaaactctcctgctttcttatacaattgaaccacaatcaccatagtcacctcatcaggttcgatcccatgttccagcatag 40361478  T
Q  138 tctgaagccaaccaagcgcttcttctttaaatccacttttactataaacatcaatcaacgttccatacgttgaatt 213  Q
    ||| |||||||  ||| || |||||| | | ||||| ||||||||||||||||||||| |||||||| || |||||    
T  40361477 tctcaagccaaaaaagtgcgtcttctcttagtccacctttactataaacatcaatcaaagttccataagtagaatt 40361402  T

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