View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0728_low_3 (Length: 445)
Name: NF0728_low_3
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 215 - 437
Target Start/End: Complemental strand, 31598148 - 31597924
Alignment:
| Q |
215 |
gccggaaatgcttcaatcctccgtttacaatggaatcaaatctaggcaagttaattcaaaatcagcttctcaatacaaggtcctgaaaaaataatacagc |
314 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31598148 |
gccggaaatgcttcaatcctctgtttacaatggaatcaaatctaggcaagttaattcaaaatcagcttctcaatacaaggtcctgaaaaaataatacagc |
31598049 |
T |
|
| Q |
315 |
aatctaaatatctttgacacgtgtagcaggctactacctttatcagaatgc------atctgaatcgtcaaatagttagacctgtaaccagagtactata |
408 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31598048 |
aatctaaatatctttgacacgtgtagtag--ta--acctttatcagaatgcatctgaatctgaatcgtcaaatagttagacctgtaaccagagtactata |
31597953 |
T |
|
| Q |
409 |
tttatgttagatataatcatattcttttc |
437 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31597952 |
tttatgttagatataatcatattcttttc |
31597924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 31599067 - 31598919
Alignment:
| Q |
28 |
cagtatatgcataagaaaaagtcattctctcttggcnnnnnnn--atgagcttttttaactgtcgaggactataaggaatcggtggttaatggaaagaag |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||| | |
|
|
| T |
31599067 |
cagtatatgcataagaaaaagtcattctctcttggctttttttttatgagcttttttaactgtcgaggactataaggaattgctggttaatagaaagagg |
31598968 |
T |
|
| Q |
126 |
tttaaccatgtggataaacagattgcgttgaatttgttgatagttttgc |
174 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||| ||| |||||||||| |
|
|
| T |
31598967 |
tttaaccatttggataaatagattgccttgaattagttaatagttttgc |
31598919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2913 times since January 2019
Visitors: 4805