View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0728_low_37 (Length: 245)
Name: NF0728_low_37
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 32706915 - 32706698
Alignment:
| Q |
1 |
ccatgcttaaagggatatctggggtatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgtc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32706915 |
ccatgcttaaagggatatctgggatatttggaagtgaaattgatgcaccacgcctatagctgctatgcctgtgtcttggaaagtagaatttgtaatcgtc |
32706816 |
T |
|
| Q |
101 |
gttacctgaaatcgacgcattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataat |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706815 |
gttagctgaaatcgacgcattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataat |
32706716 |
T |
|
| Q |
201 |
aaagagggaggagctaat |
218 |
Q |
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||||||| |||||||||| |
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| T |
32706715 |
aaagaggaaggagctaat |
32706698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 32749306 - 32749254
Alignment:
| Q |
142 |
agtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaa |
194 |
Q |
| |
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||||||| |||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
32749306 |
agtgaaagcagcatagtaccaattttcaatctctacaaacatagaaatccaaa |
32749254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 3001713 - 3001615
Alignment:
| Q |
1 |
ccatgcttaaagggatatctggggtatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgt |
99 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
3001713 |
ccatgcttaaagggatatgtgggatatttggaagtgaaattgatgcaccacgcctatacctgctatacctgtgtcttggagagtagaatttgtaatcgt |
3001615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 3001291 - 3001217
Alignment:
| Q |
118 |
cattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatcca |
192 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
3001291 |
cattctggtataggaaaaagtaacagtgaaaacagcacagtaccaattttcaatatctacaaacaaagaaatcca |
3001217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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