View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0728_low_38 (Length: 233)
Name: NF0728_low_38
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 37008679 - 37008475
Alignment:
| Q |
1 |
cctttatgctaaacttagattgtgacatgtatgtaaacaattctaagattgtactacatgccctttgcattttgttggattcaaagggagaaaaagaagt |
100 |
Q |
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| T |
37008679 |
cctttatgctaaacttagattgtgacatgtatgtgaacaattctaagattgtactacatgccctttgcattttgttggattcaaagggagaaaaagaagt |
37008580 |
T |
|
| Q |
101 |
tgcatttgctcaatgtccacaacgattctatgatgcggtaaaagatgatgcttatggaaatcagcttgtggctttgcctatggtgagtcaatttaccatg |
200 |
Q |
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| T |
37008579 |
tgcatttgctcaatgtccacaacgattctatgatgcggtaaaagatgatgcttatggaaatcagcttgtggctttgcctatggtgagtcaatttaccatg |
37008480 |
T |
|
| Q |
201 |
ttatt |
205 |
Q |
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||||| |
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| T |
37008479 |
ttatt |
37008475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 37025850 - 37025690
Alignment:
| Q |
12 |
aacttagattgtgacatgtatgtaaacaattctaagattgtactacatgccctttgcattttgttggattcaaagggagaaaaagaagttgcatttgctc |
111 |
Q |
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|||||||||||||||||| | || |||||| ||||||||| ||||| ||| | ||||||||||| |||||||| || ||||| ||||||||||||| || |
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| T |
37025850 |
aacttagattgtgacatgcacgtgaacaatcctaagattgctctacacgccttgtgcattttgttagattcaaaaggggaaaaggaagttgcatttgttc |
37025751 |
T |
|
| Q |
112 |
aatgtccacaacgattctatgatgcggtaaaagatgatgcttatggaaatcagcttgtggc |
172 |
Q |
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||||||| |||| ||||||||||| ||||||| ||| ||| |||||||||||||||||| |
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| T |
37025750 |
aatgtccccaacaattctatgatggtctaaaagacgatccttttggaaatcagcttgtggc |
37025690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 17657698 - 17657812
Alignment:
| Q |
18 |
gattgtgacatgtatgtaaacaattctaagattgtactacatgccctttgcattttgttggattcaaagggagaaaaagaagttgcatttgctcaatgtc |
117 |
Q |
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||||||||||||| |||||||||| | || ||||| | |||||| | ||||||||| | || || || || ||||||||||| || ||||||||||||| |
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| T |
17657698 |
gattgtgacatgtttgtaaacaatccaaatattgttatgcatgccttgtgcattttgcttgactccaaaggggaaaaagaagtagcttttgctcaatgtc |
17657797 |
T |
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| Q |
118 |
cacaacgattctatg |
132 |
Q |
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| || | |||||||| |
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| T |
17657798 |
cccagcaattctatg |
17657812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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