View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0728_low_4 (Length: 426)
Name: NF0728_low_4
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 28 - 419
Target Start/End: Original strand, 3494623 - 3495016
Alignment:
| Q |
28 |
cactatgggtggtttctgcagatgcttggcatcttcccgaaggtatggatgagatggttgacgacgataatcttttgttggaggtaccagatcatgagaa |
127 |
Q |
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| T |
3494623 |
cactatgggtggtttctgcagatgcttggcatcttcccgaagatatggatgagatggttgacgacgataatcttttgttggaggtaccagatcatgagaa |
3494722 |
T |
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| Q |
128 |
tgagcacacaccttcatctgaatatgagaacaataattcaaagccttcccacgataacagagcatcagaacagattgtcatggttggttgttggctggct |
227 |
Q |
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| T |
3494723 |
tgagcacacaccttcatctgaatatgagaacaataattcaaagccttcccacgataacagagcatcagaacagattgtcatggttggttgttggctggct |
3494822 |
T |
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| Q |
228 |
atgaaagaggtacttatttgaaataggttacatatacttttaaaatttgtggtatgattgtatttggtgtatgtttaatttcaaaattatggagtttcta |
327 |
Q |
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| T |
3494823 |
atgaaagaggtacttatttgaaagaggttacatatacttttaaaatttgtggtatgattgtatttggtgtatgtttaatttcaaaattatggagtttcta |
3494922 |
T |
|
| Q |
328 |
tctcctgcactggtaattgtcatataggaccagtgtacaccgtgttagccaacctttagttatcaaacttaaaattatta--tgagtataatct |
419 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||| |
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| T |
3494923 |
tctcctccactggtaattgtcatataggaccagtgtacgccgtgttagccagcctttaattatcaaacttaaaattattatttgagtataatct |
3495016 |
T |
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