View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0728_low_40 (Length: 215)
Name: NF0728_low_40
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 35745628 - 35745470
Alignment:
| Q |
4 |
agtgagatgaataacattgaaagacaagacatgcagaagatgttggaagtctagcattacctatctatctgagatatcctaggcactattaattgatatt |
103 |
Q |
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| T |
35745628 |
agtgacatgaataacattgaaagacaagacatgcagaagatgttggaagcttagcattacctatctatctgagatatcctaggcactattaattgatatt |
35745529 |
T |
|
| Q |
104 |
atataagcacttgcagggactgaaagtgataaaaggctctagcacacctaagaagtctt |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745528 |
atataagcacttgcagggactgaaagtgataaaaggctctagcacacctaagaagtctt |
35745470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 35745469 - 35745416
Alignment:
| Q |
145 |
gcacacctaagaagtcttcaaaggctcagagcaaagaaaatggagagtcaatgg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745469 |
gcacacctaagaagtcttcaaaggctcagagcaaagaaaatggagagtcaatgg |
35745416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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