View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0728_low_7 (Length: 395)
Name: NF0728_low_7
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 13786579 - 13786388
Alignment:
| Q |
33 |
aaaagatcttgacttgcttctgattttaatgcactaaatactgaaaataataatccaggatctgattcagattgttgaaaatgaacttggactcttgtat |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13786579 |
aaaagatcttgacttgcttctgattttaatgcactaaatactgaaaataataatccaggatctgattcagatcgttgaaaatgaacttggactcttgtat |
13786480 |
T |
|
| Q |
133 |
ggggcatgtgaaagaataaaataattgtaaaacaattcagtgtgtggtacggaattcttcaaacttgagaatattataaaaagatgatcaac |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13786479 |
ggggcatgtgaaagaataaaataattgtaaaacaattcagtatgtggtacggaattcttcaaacttgagaatattataaaaagatgatcaac |
13786388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 314 - 388
Target Start/End: Complemental strand, 13786299 - 13786224
Alignment:
| Q |
314 |
agaaattaatgactacacaatagattttt-gcatgagatggtgtcattccttatgaactcatttcaagtataatct |
388 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
13786299 |
agaaattattgactacacaatagattttttgcatgagatggtgtcattccttatcaactcatttcaagtatgatct |
13786224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 28167119 - 28167239
Alignment:
| Q |
71 |
tactgaaaataataatccaggatctgattcagattgttgaaaatgaacttggactcttgtatggggcatgtgaaagaataaaataattgtaaaacaattc |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28167119 |
tactgaaaataataatccaggatctgattcagatcgttgaaaatgaacttggactcttgtatggggcatgtgaaagaataaaataattgtaaaacaattc |
28167218 |
T |
|
| Q |
171 |
agtgtgtggtacggaattctt |
191 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
28167219 |
agtgtgtggtacgaaattctt |
28167239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3433 times since January 2019
Visitors: 4814