View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0728_low_9 (Length: 370)
Name: NF0728_low_9
Description: NF0728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0728_low_9 |
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| [»] scaffold0049 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 75 - 359
Target Start/End: Complemental strand, 22069207 - 22068922
Alignment:
| Q |
75 |
aataattatgaaatgaatcatctgaaattgtgctcataatacagttttaccagatttctaatatattcatctttttcattgttcaatagctgacaataat |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
22069207 |
aataattatgaaatgaatcatctgaaattgtgctcataatgcagttttaccagatttctaatatattcatttttttctacgttcaatagctgacaataat |
22069108 |
T |
|
| Q |
175 |
catgtagatcttctctcnnnnnnnn-tcatgcagatctaaaagttttcatggacatttctaaaaataatttaacccatattttagtaatttttgtaaact |
273 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
22069107 |
catgtagatcttctctaaaaaaaaaatcatgtagatctaaaagttttcatggacatttctaaaaataattgaactcatattttagtaatttttgtaaact |
22069008 |
T |
|
| Q |
274 |
acaatgagtaattcaaatttaagaacaagatctacactaggaatcaatctaactataatattaaccatggttactttgcaattcat |
359 |
Q |
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|||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22069007 |
acaaggagtaattcaaatctaagaacaagatctacaccaggaatcaatctaactataatattaaccatggttactttgcaattcat |
22068922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 200 - 359
Target Start/End: Original strand, 21834032 - 21834191
Alignment:
| Q |
200 |
tcatgcagatctaaaagttttcatggacatttctaaaaataatttaacccatattttagtaatttttgtaaactacaatgagtaattcaaatttaagaac |
299 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
21834032 |
tcatgtagatctaaaagttttcatggacatttctaaaaataattaaacccatattttagtaatttttgtaaactacactgagtaattcaaacctaagaac |
21834131 |
T |
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| Q |
300 |
aagatctacactaggaatcaatctaactataatattaaccatggttactttgcaattcat |
359 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21834132 |
aagatctacaccaggaatcaatctaactataatattaaccatggttactttgcaattcat |
21834191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 21833931 - 21834043
Alignment:
| Q |
73 |
caaataattatgaaatgaatcatctgaaattgtgctcataatacagttttaccagatttctaatatattcatctttttcattgttcaatagctgacaata |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21833931 |
caaataattatgaaatgaatcatctgaaattgtgctcataatgcagttttaccatatttctaatatattcatctttttcattgttcaatagctgacaata |
21834030 |
T |
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| Q |
173 |
atcatgtagatct |
185 |
Q |
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||||||||||||| |
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| T |
21834031 |
atcatgtagatct |
21834043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 13699 - 13589
Alignment:
| Q |
75 |
aataattatgaaatgaatcatctgaaattgtgctcataatacagttttaccagatttctaatatattcatctttttcattgttcaatagctgacaataat |
174 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13699 |
aataattatgaaatgaatcatctgaaattgtgctcataatgcagttttaccatatttctaatatattcatctttttcattgttcaatagctaacaataat |
13600 |
T |
|
| Q |
175 |
catgtagatct |
185 |
Q |
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||||||||||| |
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| T |
13599 |
catgtagatct |
13589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 13600 - 13503
Alignment:
| Q |
200 |
tcatgcagatctaaaagttttcatggacatttctaaaaataatttaacccatattttagtaatttttgtaaactacaatgagtaattcaaatttaaga |
297 |
Q |
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||||| ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
13600 |
tcatgtagatctaaaagttttgatggagatttctaaaaataattgaacccatattttagtaatttttgtaaactacactgagtaattcaaatctaaga |
13503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 13304 - 13238
Alignment:
| Q |
293 |
taagaacaagatctacactaggaatcaatctaactataatattaaccatggttactttgcaattcat |
359 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13304 |
taagaacaagatctacaccaggaatcaatctaactataatattacccatggttactttgcaattcat |
13238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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